How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you nee...le: Go to CPAN Search website and search for the module that yo...it. That will be very painful and annoying task. I recommend th...ssing parameters...CPAN build and c...e to SamTools library for DNA sequencinglibbiojava-java - Java API to...3966 days ago
Computer simulation of genetic mechanism !!
...e in a dynamic, quantitative, and often, a pictorial way. Much...ate synthetic next-generation sequencing data by mimicking real sequencing process with empirical...GemSIM Next generation sequencing read simulator http://sourcef...nage SNPs under more flexible and useful settings. If you need models...2991 days ago
Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3918 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have eval...isting state-of-the-art tool sets and found that its accuracy and p...on data generated from a specific seque...dels proposed in DAVI are generic and can be used across different NGS tec...1162 days ago
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Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways ...bs I used Matlab, SAS, SPSS, R and several Bioconductor packages...Matlab had a lot of powerful tools and w...informatics work that is math heavy and deals with a large amount of data.3968 days ago
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Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as th...s, correcting sequence errors and t...s as obtained from ultra-deep sequencing of a mixed sample. The packag...ling and scaffolding Illumina sequencing data of microbial communities...2702 days ago
Bioinformatics in Africa: Part2 - Kenya
International Livestock Research Institute (ILRI): Under ...use by all scientists in East and central Africa. The Platform...Facility: provides assistance and custom programming to project...sp;disease vectors, and&n...: 1. EST clustering 2. Genome sequencing and annotation 3. Functional...1200 days ago
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UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly...er experts from around the world to meet and discuss the current and future state of all aspects and applications of Next Generation Sequencing. More at >> http:...3935 days ago
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate)...an to analyze Next Generation Sequencing (NGS) data analysis. I...ship project aiming at understanding and improving the adaptive capaci...has computational facilities and expertise in NGS data analysis, and...3965 days ago
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The Ontario Institute for Cancer Research (OICR) Genomics Lab , Toronto, Canada.
...nologies to screen the genome and its products (genes, proteins, metabolites) and molecules that interact with...facilities that use robotics and informatics to generate high-...s platform uses cancer genome seque...to the development of cancer and anomalies in the genomic profile of...3935 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive...en an exponential increase in genomic and biomedical data, which will s...thms, including spectral graph theory and m..., can be used to attack challenges in sequencing, medical genomics and biologi...3918 days ago
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Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paire...ly downloading data from a particular sequencing run ID fastq-dump -...ng. The --split-files part of the command e...s we get two files, one for the first and second mate in each pair. We'll use...1575 days ago
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high demand. An explosion in biological data has resulted from genome projects, next generation sequencing and other 'omics' techniques. Bioinforma...3432 days ago
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?3213 days ago
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Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to comprehand the genomic complexity of all the or...3923 days ago