Results for "dRAD and ddRAD sequencing"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you nee...le: Go to CPAN Search website and search for the module that yo...it. That will be very painful and annoying task. I recommend th...ssing parameters...CPAN build and c...e to SamTools library for DNA sequencinglibbiojava-java - Java API to...3948 days ago
Computer simulation of genetic mechanism !!
...e in a dynamic, quantitative, and often, a pictorial way. Much...ate synthetic next-generation sequencing data by mimicking real sequencing process with empirical...GemSIM Next generation sequencing read simulator http://sourcef...nage SNPs under more flexible and useful settings. If you need models...2973 days ago
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Bookmarks
Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3899 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have eval...isting state-of-the-art tool sets and found that its accuracy and p...on data generated from a specific seque...dels proposed in DAVI are generic and can be used across different NGS tec...1144 days ago
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Files
- Liver cancer is third leading cause of deaths and fourth most frequent occuring cancer worldwide. There...s to look the relationships between mRNA, methylation and m...gene by binding improperly to 3'UTR region of a gene and hence...
3558 days ago
- Genome sequencing, analysis and expression of Alien genome. Note: This image/cartoon is create only for fun. It has nothing to do with any scientific findings.
3429 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways ...bs I used Matlab, SAS, SPSS, R and several Bioconductor packages...Matlab had a lot of powerful tools and w...informatics work that is math heavy and deals with a large amount of data.3949 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3942 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as th...s, correcting sequence errors and t...s as obtained from ultra-deep sequencing of a mixed sample. The packag...ling and scaffolding Illumina sequencing data of microbial communities...2683 days ago
Bioinformatics in Africa: Part2 - Kenya
International Livestock Research Institute (ILRI): Under ...use by all scientists in East and central Africa. The Platform...Facility: provides assistance and custom programming to project...sp;disease vectors, and&n...: 1. EST clustering 2. Genome sequencing and annotation 3. Functional...1181 days ago
Top-level pages
- The completion of the first human genome drafts was just a start of the modern DNA sequencing era which resulted in...T-NGS). The decreasing genome sequencing cost and desire to explore and understand biological machanism at g...e language are not enough to handle all sort of biological needs, whic...
3945 days ago
- "Bioinformatics is a science of biological predictions and analysis" -- Jitendra Na...ce data: The primary data of sequencing projects are DNA sequences. T...rgies of different protein ligands) can be characterized by MD simulat...h;219The Genome International Sequencing Consortium (2001) Initial seq...
3945 days ago
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Wire posts
News
- "Ludovic Orlando and Eske Willerslev , Centre for GeoGenetics have beaten seque...ord by about 10 times. In collaboration with Danish and international colleagues , they have...
3809 days ago
UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly...er experts from around the world to meet and discuss the current and future state of all aspects and applications of Next Generation Sequencing. More at >> http:...3917 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate)...an to analyze Next Generation Sequencing (NGS) data analysis. I...ship project aiming at understanding and improving the adaptive capaci...has computational facilities and expertise in NGS data analysis, and...3946 days ago
- ...into information by software and tools developed both in acade...gical data becoming available and turn biological information i...t consists of high-throughput sequencing of DNA and mRNA of populations and isolates. Fo...perience with high throughput sequencing analysis methods, machine lea...
3946 days ago
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ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms su...provided new tools for discovery in biology and have accelerated the development of understandin...ariation in cancer genomes Next Generation sequencing in malaria Computational com...
3946 days ago
The Ontario Institute for Cancer Research (OICR) Genomics Lab , Toronto, Canada.
...nologies to screen the genome and its products (genes, proteins, metabolites) and molecules that interact with...facilities that use robotics and informatics to generate high-...s platform uses cancer genome seque...to the development of cancer and anomalies in the genomic profile of...3917 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive...en an exponential increase in genomic and biomedical data, which will s...thms, including spectral graph theory and m..., can be used to attack challenges in sequencing, medical genomics and biologi...3900 days ago
- ...esources from the circulation and the stroma, to invade local tissues, and to found anatomically distant...o complex biological pathways and systems. These ideas motivate...of genetic methods for understanding biological functions and t...f Medicine from 1990 to 2003; and joined the Princeton University facu...
3871 days ago
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Bio-Scripts
- ...ES/FILE gatk forwards commands to GATK and adds some sugar for submittin...Tools that process sequencing machine data, e.g. Illumina base calls, and detect sequencing level attributes, e.g....Collect whole genome sequencing-related metrics. Colle...
2073 days ago
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paire...ly downloading data from a particular sequencing run ID fastq-dump -...ng. The --split-files part of the command e...s we get two files, one for the first and second mate in each pair. We'll use...1557 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high demand. An explosion in biological data has resulted from genome projects, next generation sequencing and other 'omics' techniques. Bioinforma...3414 days ago
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?3195 days ago
Groups
Python is a programming language that lets you work more quickly and integrate your systems more effec...icient high-level data structures and a simple but effective approa...gramming. Python’s elegant syntax and d...://sites.google.com/site/seqomics/sequencing/info-seq/python3943 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to comprehand the genomic complexity of all the or...3905 days ago
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Tags
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to comprehand the genomic complexity of all the organism and also used to reveal genetic factors responsible for dif...Tags: Sequencing, NGS, Whole genome resequencing, denovo sequencing, exome sequencing, methylated sequencing, RNA sequencing, Bisulfite sequencing, targeted sequencing, Chip-Seq, dRAD and ddRAD sequencing, etc
3905 days ago
