3724 days ago
3503 days ago
List of bioinformatics packages for NGS analysis !
...ugh documentation. Part of the Open Bioinformatics Foundation. Contains the very useful Entrez package for API access to the NCBI databases. [ paper-2009 |&nbs...1151 days ago
Structural variation: the hidden genomic treasure
...ects of selection shaping their evolutionary trajectories. Structure variation sequencing signature (Source: NatRev Genetics) Related tools, databases and publications are listed b...2711 days ago
Public Databases for Bioinformatics !
...://www.encodeproject.org/files/ENCFF177HHM/@@download/ENCFF177HHM.bam as we as the GENCODE annotation v29 from ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release...1148 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...pproaches to molecular biology, multiscale modeling, pathways,gene networks. Computational Proteomics: Filtering and indexing sequence databases, Peptide quantification and i...3508 days ago
Bio++ : C Language libraries for your biological need
...ed numerical tools (numerical derivatives, parameter transforms...),A new library, Bio++ RAA (Remote Acnuc Access), allowing you to fetch public databases like GenBank, EMBL or SwissPr...3956 days ago
Check the Size of a directory & Free disk space.
The amount of databases we bioinformatician deal are just HUGE … In such cases, we always need to check our server for free spaces etc. I planned this article to explain...3711 days ago
3956 days ago
3955 days ago
BEReX : Biomedical Entity-Relation eXplorer
...gration, search, and exploration tool. BEReX integrates eight popular databases (STRING, DrugBank, KEGG, Phar...integrated network by combining the information available from these databases. Users search the integrated...3849 days ago
Conserved Domain Database (CDD) version 3.11 released
...-specific score matrices (PSSMs) have been recomputed for many models in CDD, and frequency tables have been added to the PSSMs; The search databases distributed as part of this r...3736 days ago
3957 days ago
Researcher in computer science/biology
.... Basic programming or scripting skills are required. Experience in Python, R, Perl, Linux-based operating systems and moreover knowledge of databases and web programming will be a...3955 days ago
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
...through the development of open-source biological pathway and network databases and visualization and analysi...al processes using molecular profiles Biological pathway and network databases and analysis tools Link @...3957 days ago
3957 days ago
Introduction to Bioinformatics - Week 2 - Lecture 1
...y OpenCourseWare [ http://ocw.metu.edu.tr ] Course Title: Introduction to Bioinformatics Lecture Title: Introduction to biology, biological databases, and high-throughput data sou...3912 days ago
Introduction to Bioinformatics - Week 2 - Lecture 2
...y OpenCourseWare [ http://ocw.metu.edu.tr ] Course Title: Introduction to Bioinformatics Lecture Title: Introduction to biology, biological databases, and high-throughput data sou...3912 days ago
2702 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...subunit (23S/28S ribosomal RNAs) #SSU: Small subunit (16S/18S ribosomal RNAs) my $silva_url_LSU = 'https://www.arb-silva.de/fileadmin/silva_databases/release_138_1/Exports/SILVA_1...1169 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...If there will be bioinformatics company owned by you in future, What are your company focus and aim? With the increasing amount of data in databases, there is already a massive n...2371 days ago
3714 days ago
Comment on "Basic command-line to run BLAST"
...e tailored to different types of queries and databases. The most common programs are...ches can be performed against many different databases, including the NCBI GenBank,...ST is a powerful tool for searching sequence databases and can be used for many diff...432 days ago
Comment on "Command line to create blast uniref database !"
wget ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/uniref90.fasta.gz gunzip -v uniref90.fasta.gz makeblastdb -in uniref90.fasta -dbtype prot -input_type fasta -out uniref90.fasta954 days ago