Results for "datasets"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...iuc.edu/labs/lewin/donthu/Synteny_assign/html/), SyntenyTracker was shown to be an efficient and accurate automated tool for defining HSBs using datasets that may contain minor errors...2603 days ago
Computer simulation of genetic mechanism !!
...n individual based model intended to simulate datasets under a very broad range of c...simulator for the simulation of case control datasets at SNP markers https://mathge...e replica, differential, non-stranded RNA-Seq datasets. http://useq.sourceforge.net/...2968 days ago
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Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3938 days ago
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to analyse the large scale genomics datasets. But we need to understand the background of...
3938 days ago
- +75 more Bookmarks
Files
- ...tagenomes and transcriptomes as well as assembly of putative plasmids and biosynthetic gene clusters from whole-genome sequencing and metagenomic datasets.
817 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference g...computing resources. Our evaluation using three small real paired-end datasets shows that PASHA is able to p...2679 days ago
Awesome perl frameworks, libraries and software - PART 4
...s a suite of tools for parsing, analyzing, and graphing logs and other datasets. schweikert/postgrey -...amework datameet/india-election-data - To map publicly available datasets related to General Assembly (...2487 days ago
Top-level pages
- ...A sequence and a computer program (it can be shown that the DNA represents a Turing Machine). Analyses in bioinformatics focus on three types of datasets: genome sequences, macromolec...
3940 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...rror correction of high-throughput sequencing datasets with non-uniform coverage. Me...Geoseq: a tool for dissecting deep-sequencing datasets. Gurtowski et al, BMC Bioinfo...of R and Bioconductor for analysis of genomic datasets, available at R and Bioconduc...3772 days ago
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Wire posts
News
- Dr Eric Londin, Assistant Professor, Thomas Jefferson University, USA, stated that analysis of 44 exome datasets from four different testing kits showed that they missed a high proport...
3618 days ago
- ...on heterozygous SNPs, multi-nucleotide polymorphisms (MNPs) and insertion-deletions (InDels). Multi-omic integration of datasets shows related attributes from different datasets in a biologically meaningful...
2356 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...nformatician will therefore also have to provide researchers with advices on their experimental designs in order to ensure compliance of produced datasets with pipelines requirements....3942 days ago
- ...aimed at establishing biomarker-based strategies for high throughput diagnostic screening. Key tasks will involve multivariate analysis of large datasets, bioinformatic-based selectio...
3846 days ago
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ResearchLabs posts
- ...etween biology, statistics and computer science to address questions of outstanding biological importance through intrepretation of large genetic datasets. Profile: Associate Profe...
3867 days ago
- ...igenetics and technological and informatics aspects. The group is both computational and experimental. We ask biological questions to large datasets made using novel genomics tec...
3861 days ago
- +4 more ResearchLabs posts
Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
...ical data, which will soon outstrip advances in computing power to perform current methods of analysis. Extracting new science from these massive datasets will require not only faster...3895 days ago
Critical to discoveries in bioinformatics
EMBL-EBI distributes datasets worldwide using the Janet network. This biological data enables the discovery of new drugs, new diagnostics and increasingly new agro-chemicals. The...3786 days ago
Bio-Scripts
Installing ggplot2 and its dependencies on Ubuntu !
...-o colorspace.so colorspace.o init.o -L/usr/lib/R/lib -lR installing to /usr/local/lib/R/site-library/colorspace/libs ** R ** data *** moving datasets to lazyload DB ** demo ** i...1543 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # The number of datasets to subselect from the project. N=5 # Get...1535 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...cs company will be developing effective tools to eliminate manipulated datasets and information that exist in the literature and provide trustworthy clean information/datasets for researchers. How muc...2355 days ago
Tags
- How cells, tissues and organisms interpret the information encoded in the genome has vital implications for our understanding of development, health and disease. Launched in 2003, the ENCyclopedia Of DNA Elements (ENCODE) project has the aim of mapping the functional elements in the human genome ...
Tags: ENCODE3, collection, research, articles, Encyclopedia, DNA, Elements, datasets, tools
1359 days ago
- Update! Assembly and Genome record pages now redirect to new NCBI Datasets pages. NCBI Datasets is a new resource that makes it easier to find and download genome data. Learn more: https://ncbiinsights.ncbi.nlm.nih.gov/2023/07/11/ncbi-datasets-genome-assembly-pages/ #NCBICGR Effective July ...
Tags: Assembly, Genome, Record, pages, redirect, NCBI, Datasets
291 days ago
Comments
Comment on "CovCal: Coverage / Read Count Calculator"
...er of reads that covers each base of the reference genome. Estimating the sequencing coverage is very important when you are simulating datasets. The coverage equation is def...576 days ago
Comment on "ncbi-datasets-cli -- Quickstart: command line tools !"
...(base) [jnarayan@hn1 TOOLS]$ curl -o datasets 'https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/LATEST/linux-amd...mat 'https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/LATEST/linux-amd...(base) [jnarayan@hn1 TOOLS]$ chmod +x datasets dataformat...873 days ago
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