Results for "de-novo"
Blogs
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable diseases requires an approach that looks at all the variant bases and types in a genome. While a PacBio de...2605 days ago
String graph based genome assembly software and tools !
In graph theory, a string graph is an intersection graph of curves in the plane; each curve is called a "string". String graphs...2325 days ago
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Bookmarks
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3907 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tutorial at http://chagall.med.cornell.edu/NGScourse/ You can also add yo...3484 days ago
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Files
Evaluation of genome assembly software based on long reads
TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of p...1917 days ago
- SPAdes—St. Petersburg genome Assembler—was originally developed for de novo assembly of genome sequencing data produced for cultivated microbial isolates an...
821 days ago
Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3941 days ago
Want to Know which genome assembler rule the world ?
Assemblathon 2: evaluating de novo methods of genome assembly http://www.gigasciencejournal.com/content/2/1/10/abstract http://blogs.nature.com/news/2013/07/gen...3917 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...ntage of both shared-memory multi-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its potential to perform high-quality de-novo assembly of large genomes in...2682 days ago
Awesome perl frameworks, libraries and software - PART 4
tjstein/php5-fpm-munin-plugins - A set of Munin plugins for PHP5-FPM perusio/nginx-munin - A set of plugins for monitoring nginx with Munin openresty/lua-...2491 days ago
Top-level pages
Bioinformatics Companies in India
Following are the list of top 30 bioinformatics companies in India. The companies name order does not follow any specific pattern. 1. Accelrys Software Solution Pvt Lt...3922 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant...3776 days ago
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Wire posts
News
Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
...er cost. The availability of hundreds of genomes in a short time is expected to revolutionize area of life sciences. A number of new methods like de-novo sequencing, resequencing, tra...3842 days ago
- A team from Cold Spring Harbor Laboratory has released an algorithm, called Scalpel, for finding insertions and deletions in next generation sequencing data sets. Scalp...
3543 days ago
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Opportunity posts
- INDIAN INSTITUTE OF SPICES RESEARCH (Indian Council of Agricultural Research) Marikunnu P.O., Kozhikode – 673 012, Kerala Walk- in- Test cum Interview (based on te...
3640 days ago
JRF in Bioinformatics @ Bioinformatics Centre, North-Eastern Hill University
Applications with complete bio-data are invited for JRF (3) and Project Assistant (1) in a DBT project "Next Generation Sequencing (NGS)-based de novo assembly of expre...3465 days ago
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Bio-Scripts
- ...░▓▓▓^▓▓▓░ Transrate v1.0.3 by Richard Smith-Unna, Chris Boursnell, Rob Patro, Julian Hibberd, and Steve Kelly DESCRIPTION: Analyse a de-novo transcriptome assembly using...
2120 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloads/autoConTAMPR/bin$ sudo apt install libpar-packer-perl Reading package lists......1508 days ago
Polls
Which of the following programming language is best for a bioinformatics beginner?
...earch work and I will like to learn a programming language which is compatible with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align re...3527 days ago
Tags
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat element boundaries and family relationships from se...
Tags: Bioinformatics, Analysis, NGS, Repeats, TE, RepeatModeler, RECON, de-novo, family, Genome
2814 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not requ...Tags: dnaPipeTE, de-novo, assembly, annotation, Pipeline, Transposable, Elements
2342 days ago
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Comments
- AfterQC AfterQC - Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data. dupRadar dupRadar. An R package which provide...
2134 days ago
- Canu is one of the best de novo assemblers available for long reads - it’s a fork and updated version of the Celera assembler that was used to assemble the h...
2172 days ago
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