Results for "differential"
Users
About me: ...like shotgun sequencing, linked reads, and long-read sequencing for whole-genome resequencing, variant calling, and transcriptome assembly, and differential expression analysis, and deve...1150 days ago
Blogs
Computer simulation of genetic mechanism !!
...tasim/index.html RNA Seq Simulator RSS takes SAM alignment files from RNA-Seq data and simulates over dispersed, multiple replica, differential, non-stranded RNA-Seq dataset...2985 days ago
Live Webinar on RNA-Seq Data Analysis on 9 Nov 2016
...NGS supports an extensive workflow for the analysis and visualization of RNA-Seq data. The workflow includes Transcriptome / Genome alignment, Differential expression analysis with Stat...2765 days ago
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Bookmarks
Next Generation Sequencing (NGS) Tutorials
...o Assembly for Illumina Data Introductory tutorial https://docs.google.com/document/pub?id=1N3AB9ptISUu4zULqe1kXpVF0BDyGb5f5yzxWSJd_WNM RNAseq Differential Gene Expression Introductory...3497 days ago
- ...ature Protocols In this tutorial we cover the concepts of RNA-Seq differential gene expression (DGE) analysi...his tutorial we compare the performance of three statistically-based differential expression tools:* CuffDiff*...
3663 days ago
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Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...se the ABySS parallel assembler for de novo transcriptome analysis] Differential expression analysis R-SAP: a...er et al, Nature Biotechnology 30:99 - 104, 2012 Publisher Website Differential gene and transcript expressio...3789 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...cofc.edu/software.html#metasimRNA Seq Simulator RSS takes SAM alignment files from RNA-Seq data and simulates over dispersed, multiple replica, differential, non-stranded RNA-Seq dataset...3747 days ago
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News
R package for visualising GO enrichment
...word clouds and arranges them together with figures of experimental data. This allows us to draw informative summary plots for analyses such as differential expression or clustering, whe...3950 days ago
Surrogate Variable Analysis (SVA)
...istics) and (3) removing batch effects with known control probes (Leek 2014 biorXiv). Removing batch effects and using surrogate variables in differential expression analysis have been...3485 days ago
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Opportunity posts
System Biologist at Millennium Software productions India Private Limited
...fication : B.Tech or M.Sc in Bioinformatics Required Skills: 1) Basic knowledge of cell signaling pathways, chemical/enzyme kinetics, and differential equation based modeling appro...3939 days ago
SRF position in Computational Systems Biology Computational biology Group, IIIT-Delhi
...hout the program. Candidate should have cleared GATE/UGC-CSIR examinations. Applicant should have done basic mathematics courses like calculus, differential equations, numerical analysis...3733 days ago
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ResearchLabs posts
- ...classical gene by gene approaches are required. We combine Work to establish improved quantitative experimental assays (such as microarrays or differential in-gel electrophoresis) and...
3958 days ago
- ...ffects prevalent in higher eukaryotes. We therefore combine work to establish improved quantitative experimental assays, such as microarrays or differential in-gel electrophoresis, and d...
3779 days ago
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Video
May 17, 2013 - Differential Network Analysis
Steve Horvath presents Differential Network Analysis at the UCLA Human Genetics/Biostatistics Network Course3906 days ago
Tags
RNA-Seq differential expression work flow using DESeq2
One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.Tags: RNA-Seq, differential, expression, work, flow, DESeq2
996 days ago
RNA-seq workflow: gene-level exploratory analysis and differential expression
Here we walk through an end-to-end gene-level RNA-seq differential expression workflow using Bioconductor packages. We will start from the FASTQ files, show how these were quantified to the reference transcripts, and prepare gene-level count datasets for downstream analysis. We will perform explo...Tags: RNA-seq, workflow, gene-level, exploratory, analysis, differential, expression
949 days ago
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Comments
Comment on "Tools for Differential expression analysis"
...rs to identify genes that are differentially expressed between two or mo...ools available for performing differential expression analysis, includin...ting variance and testing for differential expression. edgeR: Anoth...an R package that is used for differential expression analysis of RNA-Se...431 days ago
Comment on "Running Trinity on RNA-seq !"
...nce. This is a prerequisite to many other analyses such as examining differentially expressed transcripts among...and account for them in your further data explorations. Perform differential expression analysis. Trinity...2133 days ago
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