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Introduction to Bioinformatics
...torial at EBI Bioinforamtics Training Resources -Links to an excellent selection of bioinformatics tools training at NYU DNA composition and Exon prediction -Sequence bas...3926 days ago
Bioinformatics Courses Around the World
Bioinformatics Courses around the world Here is the list Bioinformatics courses offered around the world. Reasons for constructing this page are: To show the exten...3948 days ago
Next generation sequencing in R or bioconductor environment
...peaks, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom features suc...via Rsamtools) and associating them with genomic feature ranges, such as exons or genes. This way one can q...3630 days ago
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Perl script to find coding regions in DNA sequences
...test the program, save this two files in your current working directory: exon.fa and intron.fa. Both files contain the sequence of a real exon and intron, respectively. Ext...2160 days ago
Bash script to get exon fragments from genome files !
#Exons are already defined in the GTF file, so we simply need to print lines that are marked exonic. gunzip -c genome_file.gtf.gz | awk 'BEGIN{OFS="\t";} $3=="exon" {print $1,$4-1,$5}' | bedtools sort | bedtools merge -i - | gzip > my_exon.bed.gz1371 days ago
Tags: ChopStitch, exon, annotation, splice, graph, transcriptome, assembly, whole, genome, sequencing
2138 days ago
Tags: AnchorWave, Anchored, Wavefront, Alignment, collinear, regions, conserved, anchors, CDS, exon, currently, breaks, collinear, regions, fragments, anchor, inter-anchor, intervals
807 days ago
Comment on "Does anyone have Nanopore latest updates?"
Determining Exon Connectivity in Complex mRNAs by Nanopore Sequencing http://biorxiv.org/content/early/2015/05/22/0197523275 days ago
Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.3653 days ago