Results for "generated"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...chromosome) and conserved synteny (presence of two or more genes on chromosome of each of the two species) on several genomes. Figure: Image generated with Evolution Highway (EH) t...2625 days ago
List of gene ontology software and tools
...rases to specific genes that are either chosen by trained curators or generated automatically. GO is designed...gestions are welcome at wego@genomics.org.cn. Here is a sample output generated by WEGO http://wego.genomics...3724 days ago
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Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
...uracy and performance is comparable to existing tools used for bench-marking. We further demonstrate that while existing tools are based on data generated from a specific sequencing te...1161 days ago
Managing and Analyzing Next-Generation Sequence Data
...ion. As such, they must be able to effectively react to new types of experimental technology. Recently faced with an unprecedented flood of data generated by the next generation of DNA...3653 days ago
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Files
Bioinformatics approach to Boar Taint
...orwegian Landrace (NL) and Duroc (D) pigs with varied boar taint levels were done in Illumina HiSeq2000 to >10X average coverage. Short reads generated from these samples mapped to&...3804 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
... is an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into lo...ome SequencesiAssembler is a standalone package to assemble ESTs generated using Sanger and/or Roche-454...2700 days ago
Awesome perl frameworks, libraries and software - PART 3
...mated script for performing Padding Oracle attacks openresty/rds-json-nginx-module - An nginx output filter that formats Resty DBD Streams generated by ngx_drizzle and others to...2509 days ago
Top-level pages
List of In-silico Binding Site Prediction Tools
...n Data Bank format (PDB) containing a single frame or multiple frames generated by molecular dynamics (MD) si...ets [Zhu2011]. The approach is based on the solvent excluded surfaces generated by MSMS [Sanner1996]. Pfinde...3758 days ago
Next generation sequencing in R or bioconductor environment
...e with the raw read counts per region/gene of interest (rows) for each test sample (columns). Such a count table can be imported into R or generated from BAM alignment files usin...3639 days ago
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News
Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
...be a purely experimental field, to a high end computational domain, where unrelenting computational power is required to decipher pieces of data generated through high throughput techn...3859 days ago
C-DAC launch supercomputing facility "Param Bio Blaze" !!!
...s. The technological advancements are bringing new dimensions to the understanding of molecular basis of living organisms. There is immense data generated due to computing, but storage...3743 days ago
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Opportunity posts
- ...ctions between alleles, for example through functional gene networks that are based on a combination of published data. An important part of the generated data that underlies this proj...
3963 days ago
EMBO Practical Course, Bioinformatics, large-scale data, at Shenzhen, China
...e will provide training on bioinformatics and statistics methods for genomic research. It will give insight into how biological knowledge can be generated from high-throughput sequenci...3931 days ago
- +14 more Opportunity posts
ResearchLabs posts
- ...computational biologist with expertise in cancer epigenetics. Her research focuses on algorithm development and integrative mining from big data generated on microarrays, massively par...
1567 days ago
Fun
You can't install David Brownlee ;-)
...ndra@jitendra-Aspire-S3-391[parallelLastz] sudo cpan install abs [ 4:43AM]Going to read '/home/jitendra/.cpan/Metadata' Database was generated on Thu, 02 May 2019 00:08:06...1845 days ago
Video
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...lenge contextualizing that data and converting into actionable information. Currently, the context is drawn from fragmented research literature generated by "siloed" reductionist basi...3885 days ago
Critical to discoveries in bioinformatics
...nables the discovery of new drugs, new diagnostics and increasingly new agro-chemicals. Their work, which includes the 1000-genome project, has generated petabytes of data and this gr...3807 days ago
Bio-Scripts
- ...to support OpenMP... -fopenmp checking that generated files are newer than configur...to support OpenMP... -fopenmp checking that generated files are newer than configur...to support OpenMP... -fopenmp checking that generated files are newer than configur...
2166 days ago
Install Parrot Virtual Machine !
...pulling some defaults from its configuration. do "lib/Parrot/Config/Generated.pm" failed, '.' is no longer in @INC; did you mean do "./lib/Parrot/Config/Generated.pm"? at Configure.pl line 84....1552 days ago
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Groups
Genetic Modified (GM) Food/Organisms
An organism that is generated through genetic engineering is considered to be a genetically modified organism (GMO). The first GMOs were bacteria in 1973; GM mice were generated in 1974. Insulin-producing ba...3933 days ago
Tags
Caulobacter ethensis - 2.0 : Computer-generated Genome of a Living Organism
All the genome sequences of organisms known throughout the world are stored in a database belonging to the National Center for Biotechnology Information in the United States. As of today, the database has an additional entry: Caulobacter ethensis-2.0. It is the world's fi...Tags: Caulobacter, ethensis, Computer, generated, Genome, Living, Organism
1874 days ago
Comments
Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Na...435 days ago
Comment on "Sibelia: A comparative genomics tool"
.... Run "Circos" in "circos" directory For example of such diagrams (generated from "Helicobacter_pylori.fas...non-branching paths are collapsed into a single edge. Blue edges are generated from positive strand and red...1299 days ago
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