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Results for "kmer"

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• • Jit@jit.aber

  

  Tetramer frequency: http://cgat.readthedocs.io/en/latest/recipes/metagenome_contigs_kmers.html #Kmer #Tetra #R #CGAT

  Tags: Kmer, Tetra, R, CGAT

  2599 days ago

• • Jit@jit.aber

  

  Learning Data Science: Understanding and Using k-means Clustering https://www.r-bloggers.com/learning-data-science-understanding-and-using-k-means-clustering/ #R #Clustering #Learn #Kmer

  Tags: R, Clustering, Learn, Kmer

  1740 days ago

• • BioStar@biostar

  

  Kmer: a suite of tools for DNA sequence analysis

  More at https://help.rc.ufl.edu/doc/Kmer This also includes: A2Amapper: ATAC, Assembly to Assembly Comparision tool: Comparative mapping between two genome assemblies (same species), or between two different genomes (cross species). Sim4db: Spliced alignment of cDNA and ge...

  Tags: Kmer, suite, tools, DNA, sequence, analysis

  988 days ago

• • BioStar@biostar

  

  Split kmer analysis https://www.biorxiv.org/content/10.1101/453142v1.full.pdf #Kmer

  Tags: Kmer

  988 days ago

• • Shruti Paniwala@shruti

  

  What are difference between Unique and Distinct K-mers ?

  Tags: Kmer, Distinct, Unique, Count

  988 days ago

• • Abhinav@abhinav

  

  UniqueKmer: Generate unique KMERs for every contig in a FASTA file

  Generate unique k-mers for every contig in a FASTA file. Unique k-mer is consisted of k-mer keys (i.e. ATCGATCCTTAAGG) that are only presented in one contig, but not presented in any other contigs (for both forward and reverse strands). This tool accepts the input of a FASTA file consisting of ...

  Tags: Unique, Kmer, Mers, Contigs, FASTA, Genome

  867 days ago

• • Neelam Jha@neelam

  

  k-mers tutorial - classification and taxonomy

  DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lot of time thinking about how to store k-mer graphs efficiently, discard redundant data, and count them efficiently. More recently, we've been enthused about using k-mer based simila...

  Tags: kmer, k-mer, taxonomy, classification, tree, plot, database, similarity, comparision

  980 days ago

• • Neelam Jha@neelam

  

  Applying MinHash to cluster RNAseq samples

  A kmer blog worth spending time on

  Tags: kmer, rnaseq, soursmash

  980 days ago

• • Jit@jit.aber

  

  UniqueKMER

  Generate unique k-mers for every contig in a FASTA file. Unique k-mer is consisted of k-mer keys (i.e. ATCGATCCTTAAGG) that are only presented in one contig, but not presented in any other contigs (for both forward and reverse strands).

  Tags: kmer, unique, UniqueKMER

  873 days ago

• • Rahul Nayak@rahul

  

  kebabs: package provides functionality for kernel based analysis of biological sequences via Support Vector Machine (SVM) based methods

  The kebabs package provides functionality for kernel based analysis of biological sequences via Support Vector Machine (SVM) based methods. Biological sequences include DNA, RNA, and amino acid (AA) sequences. Sequence kernels define similarity measures between sequences. The package im...

  Tags: kebabs, package, kernel, analysis, biological, sequences, Support, Vector, Machine, SVM, methods, kmer

  790 days ago