Results for "low-coverage"
Users
2343 days ago
Blogs
Computer simulation of genetic mechanism !!
Computer simulation is the discipline of designing a model of an actual or theoretical physical/biological system, executing the model on a digital computer, and analyzing...2979 days ago
Various scholarships around the world !!
This page provides information on scholarships for developing countries students who are in need of scholarship to study at home and abroad. A scholarship...2821 days ago
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Bookmarks
Simons Genome Diversity Project
Complete genome sequences from more than one hundred diverse human populations All genomes in the dataset were sequenced to at least 30x coverage using Illumina technolog...1096 days ago
Alignment of closely related whole genomes/scaffolds
With the relative ease and low cost of current generation sequencing technologies has led to a dramatic increase in the number of sequenced genomes for species across the...3023 days ago
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Files
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour which is recognized as a complex genetic trait called boar taint.Androstenone and Skato...3793 days ago
Pages
- I found several useful bioinformatics articles which exaplain, define and elaborate the bioinformatics in scientific way. Therefore, instead of writting it again I de...
3925 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short re...2689 days ago
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Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant to...3783 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an ad...3628 days ago
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Wire posts
News
4273π: Bioinformatics education on low cost ARM hardware
Are you teaching bioinformatics at universities and found it complicated by typical computer classroom settings. As well as running software locally and online, students s...3902 days ago
- Do you believe in Zombies stories … Hmm confused? Don’t worry there is a news for you. Scientists from the Integrated Ocean Drilling Program have announced th...
3900 days ago
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Opportunity posts
FACULTY POSITIONS AT IIIT-ALLAHABAD
OPENINGS OF FACULTY POSITIONS AT IIIT-ALLAHABAD (Under Tenure-Track Model) Open Advt. No IIITA/DIC/16012014 IIIT-Allahabad has several Openings for the Faculty po...3759 days ago
- Advertisement: Research Position in Computational Biology in the group of Shree P. Pandey Positions available in the area of NGS data analysis, bioinformatics, plant genom...
3380 days ago
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ResearchLabs posts
- The laboratory is focused on the discovery and analysis of structural variation (SVs) from genomic sequence data. As part of the 1000 Genomes Project and other endeavors,...
2996 days ago
Prof. Chandrasekhar Kanduri Laboratory
Our lab has been interested in understanding how long noncoding RNAs control tumor initiation and progression, in addition to use them as potential biomarkers in diagnosis...2875 days ago
Video
Bio-Scripts
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usage; ## uses pod documentation in usage code use Getopt::Long qw(:config auto_version auto_help...2312 days ago
- # get total number of bases covered at MIN_COVERAGE_DEPTH or higher samtools mpileup mapping_result_sorted.bam | awk -v X="${MIN_COVERAGE_DEPTH}" '$4>=X' | wc -l 32876...
2213 days ago
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Tags
- Heap, that enables robustly sensitive and accurate calling of SNPs, particularly with a low coverage NGS data, which must be aligned to the reference genome sequences in advance. To reduce false positive SNPs, Heap determines genotypes and calls SNPs at each site except for sites at the both end ...
Tags: Heap, sensitive, accurate, SNP, detection, tool, low-coverage, high-throughput, sequencing, data
2212 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
NextSV, a meta SV caller and a computational pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three aligners and three SV callers and generates two integrated call sets (sensitive/stringent) for different analysis purpose. The output of NextSV is in AN...Tags: NextSV, meta-caller, structural, variants, low-coverage, long-read, sequencing, data
2102 days ago
Comments
Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg genome assem...419 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Bioinformatics Journals Ranks from Google Scholar 1: Bioinformatics Journals (the most recent Impact Factor :: 5-year Impact Factor) WIREs Computational Molecular Scie...1108 days ago
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