String graph based genome assembly software and tools !
...As the FM-index is a compressed data structure, the algorithms are very memory efficient. The SGA assembly h...significantly faster than SGA while maintaining a moderate use of main memory, and showing practical advant...2329 days ago
BBTools for bioinformatician !
...ing every valid combination of defined letter. So instead of increasing memory or time use by 6^75, it only...resource requirements than hdist=6. Just be sure to give BBDuk as much memory as possible. Removing illu...2271 days ago
2999 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR evaluates all possible...2952 days ago
3948 days ago
Check Linux server configuration !!
...p; : 3990.17(Here processor number 0 indicates that the system is having one process(processor number starts with zero))To check memory information:-================...3653 days ago
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link fo...3921 days ago
Most Commonly used Awk by Bioinformatician
...lace a pipeline of 'stuff | grep | sed | cut...' with a single call to awk. For a simple script, most of the timelag is in loading these apps into memory, and it's much faster to do i...3913 days ago
New Vaccine Clears AIDS-Causing Virus in Monkeys
...gressive clearance of a pathogenic lentiviral infection, and suggest that some lentiviral reservoirs may be susceptible to the continuous effector memory T-cell-mediated immune survei...3884 days ago
3663 days ago
SRF position in Computational Systems Biology Computational biology Group, IIIT-Delhi
...to understand the functional relationship between circadian rhythms and memory formation under stressful con...al transduction pathway to understand and predict the formation of fear memory under stressful conditions. T...3724 days ago
Memories Can Be Passed Down Through DNA
...ly identical DNA sequences (and therefore the same genetic instruction sets), yet maintain different terminal phenotypes. This nongenetic cellular memory, which records developmental...3648 days ago
Create genome scaffolding with Perl
...t exist", $projOpts->{"query"}), -verbose => 0}); } print(STDERR "Loading query sequences into memory..."); open(my $queryFile, "=...2309 days ago
Estimate Genome Size with Jellyfish and R
...etc. #-C -both-strands Count both strands #-m -mer-len=unit32 Length of the k-mer #-s -size=unit32 Hash size / memory allocation #-o -output=...2247 days ago
Tags: multiprocess, distributed, memory, overlap, layout, consensus, OLC, metagenome, assembler
2492 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RNA-seq analsis Quantify data from numerous technologies such as 10x, inDrops, and Dropseq. Customize workflows fo...Tags: Modular, efficient, constant, memory, single-cell, RNA-seq, preprocessing, bustool, kallisto
1127 days ago
Comment on "Benchmarking Perl Module !"
Benchmarking a Perl module involves measuring the performance of the module in terms of its execution time and memory usage. This can be done using the Perl Benchm...416 days ago
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