String graph based genome assembly software and tools !
...As the FM-index is a compressed data structure, the algorithms are very memory efficient. The SGA assembly h...significantly faster than SGA while maintaining a moderate use of main memory, and showing practical advant...2326 days ago
BBTools for bioinformatician !
...ing every valid combination of defined letter. So instead of increasing memory or time use by 6^75, it only...resource requirements than hdist=6. Just be sure to give BBDuk as much memory as possible. Removing illu...2268 days ago
2995 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR evaluates all possible...2948 days ago
3945 days ago
Check Linux server configuration !!
...p; : 3990.17(Here processor number 0 indicates that the system is having one process(processor number starts with zero))To check memory information:-================...3650 days ago
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link fo...3917 days ago
Most Commonly used Awk by Bioinformatician
...lace a pipeline of 'stuff | grep | sed | cut...' with a single call to awk. For a simple script, most of the timelag is in loading these apps into memory, and it's much faster to do i...3910 days ago
New Vaccine Clears AIDS-Causing Virus in Monkeys
...gressive clearance of a pathogenic lentiviral infection, and suggest that some lentiviral reservoirs may be susceptible to the continuous effector memory T-cell-mediated immune survei...3880 days ago
3660 days ago
SRF position in Computational Systems Biology Computational biology Group, IIIT-Delhi
...to understand the functional relationship between circadian rhythms and memory formation under stressful con...al transduction pathway to understand and predict the formation of fear memory under stressful conditions. T...3721 days ago
Memories Can Be Passed Down Through DNA
...ly identical DNA sequences (and therefore the same genetic instruction sets), yet maintain different terminal phenotypes. This nongenetic cellular memory, which records developmental...3645 days ago
Create genome scaffolding with Perl
...t exist", $projOpts->{"query"}), -verbose => 0}); } print(STDERR "Loading query sequences into memory..."); open(my $queryFile, "=...2306 days ago
Estimate Genome Size with Jellyfish and R
...etc. #-C -both-strands Count both strands #-m -mer-len=unit32 Length of the k-mer #-s -size=unit32 Hash size / memory allocation #-o -output=...2243 days ago
Comment on "Benchmarking Perl Module !"
Benchmarking a Perl module involves measuring the performance of the module in terms of its execution time and memory usage. This can be done using the Perl Benchm...413 days ago
2096 days ago