Results for "memory"
Blogs
String graph based genome assembly software and tools !
...As the FM-index is a compressed data structure, the algorithms are very memory efficient. The SGA assembly h...significantly faster than SGA while maintaining a moderate use of main memory, and showing practical advant...2322 days ago
BBTools for bioinformatician !
...ing every valid combination of defined letter. So instead of increasing memory or time use by 6^75, it only...resource requirements than hdist=6. Just be sure to give BBDuk as much memory as possible. Removing illu...2264 days ago
- +6 more Blogs
Bookmarks
- ...GD, BioPerl and the other GBrowse dependencies. If you haven't, please see the GBrowse HOWTO During most of the tutorial, we will be using the "in-memory" GBrowse database (no relatio...
2991 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR evaluates all possible...2944 days ago
- +35 more Bookmarks
Pages
- ...s multiple programming paradigms, including functional, object oriented, imperative and reflective. It also has a dynamic typesystem and automatic memory management; it is therefore s...
3940 days ago
Check Linux server configuration !!
...p; : 3990.17(Here processor number 0 indicates that the system is having one process(processor number starts with zero))To check memory information:-================...3645 days ago
- +6 more Pages
Top-level pages
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link fo...3913 days ago
Most Commonly used Awk by Bioinformatician
...lace a pipeline of 'stuff | grep | sed | cut...' with a single call to awk. For a simple script, most of the timelag is in loading these apps into memory, and it's much faster to do i...3905 days ago
- +16 more Top-level pages
Wire posts
News
New Vaccine Clears AIDS-Causing Virus in Monkeys
...gressive clearance of a pathogenic lentiviral infection, and suggest that some lentiviral reservoirs may be susceptible to the continuous effector memory T-cell-mediated immune survei...3876 days ago
- ...earchers the ability to control the activity of neurons with light. With this powerful tool, researchers are teasing apart the biological basis of memory, behavior, and disease (see &...
3655 days ago
- +2 more News
Opportunity posts
SRF position in Computational Systems Biology Computational biology Group, IIIT-Delhi
...to understand the functional relationship between circadian rhythms and memory formation under stressful con...al transduction pathway to understand and predict the formation of fear memory under stressful conditions. T...3716 days ago
Video
Memories Can Be Passed Down Through DNA
...ly identical DNA sequences (and therefore the same genetic instruction sets), yet maintain different terminal phenotypes. This nongenetic cellular memory, which records developmental...3640 days ago
Bio-Scripts
Create genome scaffolding with Perl
...t exist", $projOpts->{"query"}), -verbose => 0}); } print(STDERR "Loading query sequences into memory..."); open(my $queryFile, "=...2301 days ago
Estimate Genome Size with Jellyfish and R
...etc. #-C -both-strands Count both strands #-m -mer-len=unit32 Length of the k-mer #-s -size=unit32 Hash size / memory allocation #-o -output=...2239 days ago
- +7 more Bio-Scripts
Comments
Comment on "Benchmarking Perl Module !"
Benchmarking a Perl module involves measuring the performance of the module in terms of its execution time and memory usage. This can be done using the Perl Benchm...408 days ago
- ...Options=string - Pass string to the command used to submit jobs to the grid. Can be used to set maximum run time limits. Should NOT be used to set memory limits; Canu will do that for...
2092 days ago
- +4 more Comments
