Results for "miRNA target gene"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl modules and dependencies....some missing parameters...CPAN build and cache directory? [/root/.cpan]Download targ...3963 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologica...ether it encompasses multiple genes, an area containing single g...define synteny as “Two genes which occur on the same chro...ertain evolutionary important genes play an important role in ev...s conservation of large-scale gene order between species pairs....2624 days ago
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Bookmarks
- Bioinformatics is developing very rapidly. With new tools and software it i...assembling genomes, comparing DNA and protein sequences, predicting genes, finding regulatory motifs, analyzing gene expression, constructing evol...
3958 days ago
Should you get sequenced? Not all bad genes predict disease
“What we really don’t know yet is whether the predictive aspects of the ge...ine we are fighting against this society-wide misconception that having the bad gene means you’re going to g...3915 days ago
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Files
- ...d to find out new therapeutic target. One way is to look the rela...l either with inhibitor/not). MiRNA is small RNA molecules known t...mRNA expression of particular gene by binding improperly to 3'UTR region of a gene and hence block binding of TF...
3574 days ago
- SPAdes—St. Petersburg genome Assembler—was originally developed for de nov...es and transcriptomes as well as assembly of putative plasmids and biosynthetic gene clusters from whole-genome se...
838 days ago
Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3958 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to...nformatics, including sequence analysis,phylogenetics, molecular evolution and population genetics.Bio++ is designed in an e...decomposition, inversion, etc.Random number generation: Quick & Dirty (32b...3961 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with class.... Classes for Multiple alignment (Bio::Alignment), Gene Ontology(Bio::GO), PDB (Bio::PD...support for many applications such as PSORT, SOSUI, TargetP, TMHMM, GenScan, ClustalW,...3961 days ago
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Top-level pages
- "Bioinformatics is a science of bio...are a snapshot of the moving target named bioinformatics. ... " -...th System's Symphony of Life: Genetics & Medicine Web site."Th...the information stored in the genetic code, but also experimental...levant for pharmacology. Drug targets in infectious organisms ca...
3961 days ago
- Data mining, the extraction of hidden predict...gy, it’s becoming more common to generate reams of data then ask so...more, people working in bioinformatics generally come from computer scien...cs: Tools for Mining and Applying Genetic Information in Patient Car...
3960 days ago
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Wire posts
News
Lateral Gene Transfer Is Enriched in Cancer Samples
There has been always a confusion on cancer and bacteria relationship. This is the first paper which shows lateral gene transfer causes cancer. Find more at http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.10031073954 days ago
R package for visualising GO enrichment
An R package that visualizes the GO enrichment results as word clouds and arranges the...lots for analyses such as differential expression or clustering, where for each gene list we display its behaviour...3953 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Cli...ster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data a...k between sequence variation, functional variation, gene/protein expression and phenot...3962 days ago
- van Noort Group is looking for PhD fellows We currently...his young computational systems biology group is to generate biological sense from the...will be exploited to better understand two complex genetic traits: ethanol and high t...
3962 days ago
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ResearchLabs posts
The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3961 days ago
- Statistical functional genomics in experimental medicine The genome projects and the...ical backgrounds. Research Area: Linear models for microarray data Digital gene expression technologies Dete...
3961 days ago
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Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts produci...ak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST k...jayenge Raju ban gaya Genefinder. Har Ligand jo dock ka...BLAST To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Databas...Maine Bhi ClustalW Kiya Hai GeneScan Karke Dekho Alignment Ap...3932 days ago
Perl Poem: Parse it in both Perl and English!
Larry's, er, corpus has fortunately been overshadowed by that of the reigning Perl Poet, Sharon Hopkins. She has written quite a few Perl poems, as well as a paper on...3932 days ago
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Video
Influenza animation - flu virus mechanism
Animation of the mechanism of an influenza virus and how Crucell's antibodies target the HA1 proteins on the virus and prevent further spread of influenza. Client: Crucell Direction, Design...3866 days ago
How Genes are Regulated: Transcription Factors
Each cell in our body inherits the same master copy of DNA...erently. Transcription Factors help influence which genes are used in which cell. Unde...model their binding to DNA and their regulation of gene expression. Scientific Direc...3908 days ago
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Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequenc...len(seqs)) from Bio import Entrez allseq = {} for x in seqs: if 'gene-region' in x and x['gene-region'] == "complete":...1149 days ago
Parse a genbank file using regular expressions
#! /usr/local/bin/perl -w $genbank = "genbank_file.txt"; open (GENBA...GANISM\s*)(.*)/) { print "Organism: $2\n"; } elsif(/(gene)(\s*)(\d*)(\.\.)(\d*)/) { print "Gene length: $5\n"; } elsi...2930 days ago
- +23 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinfor...specialist at the faculty of Gene Engineering and Biotechnology I...thod has to be unique for the targeted biological problem and by u...s profile. Alterations in the gene, transcript, protein, and metab...red, what would you tell next generation bioinformaticians?...2375 days ago
Groups
Our research interest falls in the broad field of bioinformatics and, more speci...s CGH (Comparative Genomic Hybridization) microarrays Computational genetics Candidate gene prioritization by genomic dat...3957 days ago
This group is being designed to cover some of the common algorithms underly...assembling genomes, comparing DNA and protein sequences, predicting genes, finding regulatory motifs, analyzing gene expression, constructing evol...3915 days ago
Tags
- If i have a set of miRNA sequences, what are the tools that are available to predict the target genes? I tried miRanda and mirdb, are there any tools or databases that do the same, as the rna is not already known i cant use targetscan etc. The tool must predict the target from the fasta seq...
Tags: miRNA, miRNA target gene, gene
2693 days ago
