Software and Tools to detect structure variation with long reads !!
...variation caller using third generation sequencing Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore). It detects all types of SVs...2608 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
..., and string graph. List of analysis tools developed for Oxford Nanopore data BWA Fast nanopore data tuned alignment tool htt...ttps://documentation.tgac.ac.uk/display/NANOOK/NanoOK NanopolishNanopore analysis and genome assembly...2321 days ago
Now time is come to revolutionize amino acid sequencing by Nanopore technology
Amino acid sequencing by Nanopore recognition tunneling method3682 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads w...r profiles, including: Illumina, PacBio and Oxford Nanopore.This is an especially importa...3225 days ago
825 days ago
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing t...efence and more. The platform technology uses nanopores to analyse single molecules...ns. With a broad patent portfolio, the Oxford Nanopore pipeline includes biological...3814 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...arginAlign Description: SNV caller, specifically tailored to Oxford Nanopore Reads, written in Python; Pac...n github, example data uses 1000 genomes dataset Input: Output: nanopore Description: UCSC Nanopore...2909 days ago
Genome Assembly Tools and Software - PART1 !!
...iences). NanoMark – DNA Assembly Benchmark for Nanopore long reads DNA Assembly Benchmark for Nanopore long readsA system for benchm...by SMRT sequencing technologies (PacBio RS II) and Oxford Nanopore flow cell technologies (MinIO...2686 days ago
3245 days ago
1mb long DNA with Nanopore technology
The first continuous DNA read of more than a million bases (>1Mb) has been achieved, using Oxford Nanopore sequencing technology. Congratulations to Martin Smith and collaborators! Read more: http://bit.ly/2j5TNCO2329 days ago
Bioinformatics jobs at Acrannolife
Acrannolife are looking for skilled Bioinformatics Scientists with a minimum of 2yrs Experience in NGS data analysis including Nanopore Sequencing. This is an opportunity to work on...1288 days ago
2253 days ago
Installing Porechop on Ubuntu !
...on.py -> build/lib/porechop copying porechop/nanopore_read.py -> build/lib/porechop...packages/porechop copying build/lib/porechop/nanopore_read.py -> /home/urbe/anacond...naconda3/lib/python3.6/site-packages/porechop/nanopore_read.py to nanopore_read.cpyt...2107 days ago
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?3198 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very high sensitivity and accuracy, and also presents a significant improvement over the state-of-the-art for PacBio re...Tags: Nanopore, Sequencing, GraphMap, MinION. NGS
3225 days ago
Scaffolding of a bacterial genome using MinION nanopore sequencing
Second generation sequencing has revolutionized genomic studies. However, most genomes contain repeated DNA elements that are longer than the read lengths achievable with typical sequencers, so the genomic order of several generated contigs cannot be easily resolved. A new generation of sequencer...Tags: Nanopore, Sequencing, Technology, NGS
3225 days ago
416 days ago
Comment on "Short-read assembly using Spades !"
...rsburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Nanopore sequencing platforms. Here is...421 days ago