Results for "non coding RNA"
Bio-Scripts
#!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #transcribe DNA to RNA - T changes to U my $RNA = $DNA; $RNA =~ s/T/U/g; pr...2932 days ago
Perl script introduces control structures, arrays and hashes.
#!/usr/bin/env perl use strict; use warnings; my @first_array = ('DNA', 'ATGCGTGC', 5, 'RNA', 'AUGC'); print $first_arra...r for (my $i=0; $i 'ATCGATGCT', 'RNA' => 'AUGC',...2877 days ago
Install ATOM editor on Elemantory OS / Ubuntu
#Download ATOM deb file from https://atom.io/ https://atom.io/download/deb (base) bioqueen@bioqueen-Lenovo-ideap...e colored output. #Atom is essentially a text editor that you can use for cod...1191 days ago
Perl script to find coding regions in DNA sequences
#!/usr/bin/perl -w use strict; # if the number of input arguments is lower than...intron, respectively. Extremely different values of coding potential should be obtained with the two sequences: high values (positive) for cod...2170 days ago
Biological Sequence handling with Perl !
package Sequence::Generic; # File: Sequence/Generic.pm use s...Can't initialize sequence from non-Sequence object.\n" un...$self->{'data'} = $self->_canonica...= $type || ($sequence=~/u/i ? 'RNA' : 'DNA'); } return $se...return $seq unless $self->is_RNA; $seq=~tr/T/U/; ret...2196 days ago
- ...-right /media/urbe/MyPassport/rnaseq_boris/...CMD: /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/util/..//ut...-t 40 -m 25 -s 100000000 --canonical /home/urbe/Tools/trinity...touch /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_out...ir -p /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_out...
2142 days ago
- # list sample names & download URLs. sample_links = {"ERR4...low SAMPLES=sample_links.keys() # download yeast rna-seq data from Schurch et al,...udy rule download_all: input: expand("rnaseq/raw_data/{sample}.fq.gz",...
1531 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/b...pdir= option to select an alternate temp location. USAGE:...l) Collects reference and alternate...ts. CollectWgsMetricsWithNonZeroCoverage (Picard)(BETA Too...frequency in a reference NonNFastaSize (Picard)...
2090 days ago
Perl script to count occurrence of a character !
#!/usr/bin/env perl # -*- coding: utf-8 -*- #!/usr/bin/perl use strict; use warnings; my %count_of; while ( ) { my @val = split "\t", $_; #my...1916 days ago
Python script to read FASTA and FASTQ file !
# !/usr/bin/env python3 # -*- coding: utf-8 -*- from pysam import FastxFile def read_fasta_q_file(fasta_q_file): """Parse FASTA/Q file using `pysam....991 days ago
