Results for "non-redundant"
Blogs
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is desi...3724 days ago
List of motif discovery tools !
...d provide the masses of the resulting peptides Predict cleavage sites at basic amino acid locations in neuropeptide precursor sequences. Non-Redundant Patent Sequences - Patented S...2007 days ago
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Bookmarks
- ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.
2908 days ago
- ...ial and viral protein sequences. By default, Kaiju uses either the available complete genomes from NCBI RefSeq or the microbial subset of the non-redundant protein database nr used by N...
2883 days ago
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Pages
Awesome perl frameworks, libraries and software - PART 2
licheng/gccfilter - gccfilter is a perl filter to colorize and simplify (or expand) gcc diagnostic messages. gccfilter is particularly aimed at g++ (i.e. dealinging...2508 days ago
Top-level pages
List of In-silico Binding Site Prediction Tools
...one structure of the protein-ligand complex. Both a redundant and a non-redundant (sequence identity lower than...rithm detected 48,347 potential ligand binding sites from the 9,708 non-redundant protein entries in the PDB da...3758 days ago
Genome Assembly Tools and Software - PART1 !!
...irst, query sequences are aligned with a reference genome. Second, query sequences are ordered based on the alignment to the reference. Third, non-redundant sequences matched to the same...2699 days ago
News
SCFBio have developed Sanjeevini
...-Ligand complex in intercalation sites 15 DNA sequence to str. Converts DNA sequence to DNA structure (A-DNA or B-DNA) 16 NRDBSM Non-redundant database of small molecules...2375 days ago
BLAST nr version 5 database, (nr_v5)
NCBI have made changes the nr version 5 database, (nr_v5), to facilitate better search results and improved performance by reducing the number of redundant titles in the n...1731 days ago
ResearchLabs posts
- The Roth Lab seeks insight into biological systems through genome- and proteome-scale experimentation and analysis. Current computational interests: Systematic analy...
3721 days ago
Bio-Scripts
Bash script to alignment of short reads against reference genome !
bwa mem -t 40 -R '@RG\tID:K12\tSM:K12' \ E.coli_K12_MG1655.fa SRR1770413_1.fastq.gz SRR1770413_2.fastq.gz \ | samtools view -b - >SRR1770413.raw.bam sambamba so...1573 days ago
Command line to download blast database / protein
...are available ftp://ftp.ncbi.nlm.nih.gov/blast/db/ https://ftp.ncbi.nlm.nih.gov/blast/db/ # Database detail / description nr.*tar.gz | Non-redundant protein sequences from GenPep...957 days ago
Tags
- ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize. The identifiers can be uploaded from a text file or interactively from a network of Cytoscape. The type o...
Tags: ClueGO, Cytoscape, plug-in, visualizes, non-redundant, biological, terms, large, clusters, genes
1375 days ago
Comments
Comment on "Basic command-line to run BLAST"
...searches. Choose the database: BLAST searches can be performed against many different databases, including the NCBI GenBank, RefSeq, and non-redundant databases. Choose the databas...437 days ago
- Compressive Genomics is the solution deal with problem arisen due to sudden explosion of redundant data generated by current sequencing technology and other solution is 3r...
3931 days ago
