Results for "optimization"
Blogs
10 NGS services companies around the globe !
...S), Bioservices and solutions to domestic/ international pharma, biotech companies and academia. The company provides its services for protocol optimization, probe designing, array layou...1275 days ago
Bookmarks
- HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assembli...
1108 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2728 days ago
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Pages
Bio++ : C Language libraries for your biological need
...utions (uniform, normal, gamma, etc.).Function object implementation, with first and second order derivatives.Numerical derivatives computation.Optimization algorithms: Golden section se...3963 days ago
Genome Assembly Tools and Software - PART2 !!
...human and mouse RNA-seq data and is shown to improve significantly on the transABySS and Trinity de novo SOPRA 1.4.6 – Statistical Optimization of Paired Read AssemblySOPRA&...2701 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...sequencing errors - the authors stand by their conclusions, but the controversy demonstrates the importance of robust data analysis methods.] Optimization of de novo transcriptome asse...3795 days ago
List of visualization tools for genome alignments
...but also for improving analysis protocols, testing data quality, and generating result drafts. Its integration in analysis pipelines allows the optimization of parameters, which leads to...2299 days ago
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News
Update Genome Workbench 2.7.15 released
...e: fixed Mac OS rendering issues Text View / Flat File: performance optimization, extended capabilities of real-time rendering of molecules to tens of thousands File Import: optimization improvement to speed up load...3736 days ago
Opportunity posts
MedGenome is looking for Genome Analysts
...ho will work both independently and as part of a collaborative team to generate data from various genomics-oriented workflows and assist in the optimization and validation of new technol...1235 days ago
Protein function annotation and machine learning - UPMC - Paris, France
...ilistic models, domain architecture, machine learning, combinatorial optimization, computer grid. Title: A n...well as sophisticated machine learning techniques and combinatorial optimization approaches taking advantages...3579 days ago
- +3 more Opportunity posts
ResearchLabs posts
- ...heterogeneous data sources, focussed by biological studies in our laboratory and collaborations. Highlights of our research include: Optimization of microarray design, probe s...
3785 days ago
Bio-Scripts
Install Parrot Virtual Machine !
...ure and type, and OS........done. auto::cpu - Generate CPU specific stuff........................done. init::optimize - Enable optimization.................................1552 days ago
Tags
SWALO: Scaffolding with assembly likelihood optimization
SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Please email your questions, comments, suggestions, and bug reports to atif.bd@gmail.com.Tags: SWALO, Scaffolding, assembly, likelihood, optimization
2161 days ago
- Despite marked recent improvements in long-read sequencing technology, the assembly of diploid genomes remains a difficult task. A major obstacle is distinguishing between alternative contigs that represent highly heterozygous regions. If primary and secondary contigs are not properly identified,...
Tags: HapSolo, optimization, approach, remove, secondary, haplotigs, diploid, genome, assembly, scaffolding
1302 days ago
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Comments
- ...ests and functionality to be written around the data collected. RNA-SeQC RNA-SeQCis a tool with application in experiment design, process optimization and quality control before co...
2152 days ago
Comment on "Which are the best statistical programming languages to study for a bioinformatician?"
...p; ROC Curves Yes Yes Yes Yes Yes Optimization Yes Ye...3567 days ago
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