Results for "package"
Bio-Scripts
Install Ragout genome assembler
...ll -c bioconda ragout Collecting package metadata (repodata.json): don...Solving environment: done ## Package Plan ## environment loca...- ragout The following packages will be downloaded: p...27.6 MB The following NEW packages will be INSTALLED: rago...1458 days ago
- ...lving environment: done ## Package Plan ## environment loca...- kraken The following packages will be downloaded: p...3.2 MB The following NEW packages will be INSTALLED: jell...oconda kraken-all Collecting package metadata (repodata.json): don...
1456 days ago
- (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exis...
1209 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 ---...
1436 days ago
Install SibeliaZ in your Linux cluster !
...-c bioconda sibeliaz Collecting package metadata (current_repodata.js...next repodata source. Collecting package metadata (repodata.json): don...- sibeliaz The following packages will be downloaded: p...4.5 MB The following NEW packages will be INSTALLED: _ana...1226 days ago
- (JitMetaENV) ➜ JitMeta conda install -c bioconda fastqc Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1210 days ago
Install trimmomatic using conda !
(JitMetaENV) ➜ fastQC_out conda install -c bioconda trimmomatic Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1210 days ago
- (JitMetaENV) ➜ fastQC_out conda install -c bioconda spades Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1210 days ago
Install assembly-stats with conda !
(JitMetaENV) ➜ META_PE conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1210 days ago
- (JitMetaENV) ➜ day2 conda install -c bioconda kraken2 Collecting package metadata (current_repodata.json):...rrent_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): don...
1210 days ago
