Results for "pairs"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ntenyView' shows conservation of large-scale gene order between species pairs. A brief summary of the calcu...ies. MicroSyn searches for conserved, flanking colinear homologous gene pairs between two genomic fragments...2625 days ago
Dynamic chromosome breakpoints !!!
...ensation and decondensation process. This is followed by nuclear envelope dissolution, mitotic spindle assembly, migration of the sister chromatid pairs to the metaphase plate, divis...3567 days ago
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Bookmarks
- The enormous size of the loblolly pine genome having 22 billion base pairs compared to only 3 billion in the human genome. In other words, it is seven times larger than a human&...
3712 days ago
Alignment of closely related whole genomes/scaffolds
...across the tree of life. This increasing volume of data requires tools that can quickly compare multiple whole-genome sequences, millions of base pairs in length, to aid in the stud...3033 days ago
- +31 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...dash; Closing the Gap within Paired ReadsGapFiller is not a standard de novo assembler. It aims “only” at closing the gap between pairs of reads as a first step of a...2700 days ago
Top-level pages
- ...ons.fq qtrim=rl trimq=10 minlength=50 Subsample 10% of the first 20000 pairs in an interleaved file: refor...t" overrides interleaving autodetection, to ensure reads are treated as pairs) Pipe in a gzipped sam file...
2728 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...sets; fasta, fastq, gzipped or not; no reference genome required; read pairs can be given Output: FASTA...ription: command-line application to identify SNPs between tumor/normal pairs- predicts probability of diff...2923 days ago
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Wire posts
News
DNA Bending Propensity in the Presence of Base Mismatches: Implications for DNA Repair
...s expensive to bend mismatch-containing, defective DNA (G:T, C:C, C:T, G:A, G:G, T:T, A:A, A+:C) vs. non-defective DNA (containing A:T or G:C base pairs). DNA repair mechanisms likel...3926 days ago
Illumina reveals first dataset of long reads
...quired by Illumina releases new service for long reads sequencing i.e., FastTrack Long Reads. Average read length is around 8,500 base pairs in release dataset. Best...3923 days ago
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ResearchLabs posts
- ...p-MLH3p dependent pathway. We are interested in charactering the role of these complexes in crossover formation and distribution among all homolog pairs. Errors in this process are l...
2996 days ago
- ...al fine-scale maps using a variety of SV discovery approaches including: (i) paired-end mapping (or read pair analysis) based on abnormally mapped pairs of clone ends; (ii) read-dept...
3007 days ago
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Video
DNA is packaged in a chromosome experiment
...es in the electron microscope by Don and Ada Olins [4] and their existence and structure (as histone octamers surrounded by approximately 200 base pairs of DNA) were proposed by Roge...3891 days ago
Genetics, epigenetics and disease
...identified, there is much to learn about the DNA signals that control them. This lecture described an unusually short DNA sequence, just two base pairs long, CG, which occurs in sev...3887 days ago
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Bio-Scripts
Mapping with BWA-mem or BWA-sampe in one go with python script !
BAM files and mapping BESST requires sorted and indexed BAM files as input. Any read aligner + samtools can be used to obtain such files. Read pairs needs to be aligned in paired re...2138 days ago
- ...ssport/rnaseq_boris/AIG_AAAOSW_8_2_C1CBGACXX.IND11_noribo_clean.fastq --pairs_together --PARALLEL_STATS...-left left.fa.K25.stats.sort --right right.fa.K25.stats.sort --sorted > pairs.K25.stats -opening left.fa.K...
2142 days ago
- +6 more Bio-Scripts
Tags
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
SMASH is a completely alignment-free method to find and visualise rearrangements between pairs of DNA sequences. The detection is based on relative compression, namely using a FCM, also known as Markov model, of high context order (typically 20). The method has been approached with a tool (a...Tags: SMASH, alignment-free, tool, find, visualise, rearrangements, pairs, DNA, sequences
2341 days ago
Comments
Comment on "Sibelia: A comparative genomics tool"
...eful to consider operations that are actually performed with the genome behind the graph model. Suppose that somewhere in the genome exist two pairs of K-mers K1 and K2: 1st p...1299 days ago
- ...an process either single-end or paired-end reads. The default running mode is paired-end and requires an even number of FASTQ files represented as pairs, e.g. kallisto quant -i...
1375 days ago
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