Results for "reconstruct"
Blogs
Computer simulation of genetic mechanism !!
...nchmark RNA-Seq alignment algorithms and also algorithms that aim to reconstruct different isoforms and altern...n sequences under the constraints of the information of a particular reconstructed phylogeny http://bioserv.rp...2980 days ago
- ...of Ancestral /sequence/ reconstruction (ASR) tools: i...ity of each adjacency. ANGES:reconstructing ANcestral GEnomeS maps A...: Parsimonious Ancestral Reconstruction And Network Analysis Perf...d as binary data. FastML then reconstructs ancestral indel states assum...
2535 days ago
Bookmarks
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2956 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest versio...
2919 days ago
- +12 more Bookmarks
Top-level pages
Phylogenetic for Bioinformatics
...ng periods of time that cannot be observed directly, biologists must reconstruct phylogenies by inferring the...see list of Phylogenetics Resources on the Internet. Phylogeny and Reconstructing Phylogenetic Trees: h...3951 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...nchmark RNA-Seq alignment algorithms and also algorithms that aim to reconstruct different isoforms and altern...n sequences under the constraints of the information of a particular reconstructed phylogeny http://bioserv.rp...3742 days ago
- +2 more Top-level pages
News
Webinar: Wednesday 21 August 2013 at Noon EDT
This webinar will describe the use of combinatorial pooling to reconstruct gene sequences within BACs. Recent work in barley has shown that this level of sequence knowledge is sufficien...3925 days ago
- ...ovides genome-wide orthology and paralogy predictions which are based on the analysis of the phylogenetic trees. The automated pipeline used to reconstruct trees aims at providing a&nbs...
3924 days ago
- +1 more News
Opportunity posts
Postdoc in comparative genomics
...roject on comparative genomics of marine fish and shellfish species. In the project, we use genome resequencing data from a range of species to reconstruct the demographic history and c...1249 days ago
Tags
- Development packages for zlib and libbz2 are needed, as well as a standard compiler environment. On Ubuntu, this can be installed via: sudo apt-get install build-essential libtool automake zlib1g-dev libbz2-dev pkg-config On MacOS, the Apple Developer tools and Fink (or MacPorts or Brew) must...
Tags: PANDASEQ, program, align, Illumina, reads, PCR, primers, sequence, reconstruct, overlapping, sequence
2058 days ago
- Cogent is a tool that identifies gene families and reconstructs the coding genome using high-quality transcriptome data without a reference genome, and can be used to check assemblies for the presence of these known coding sequences. Cogent is a tool for reconstruct...
Tags: Cogent, tool, reconstruct, coding, genome, high-quality, full-length, transcriptome, sequences, genome, evaluation
1788 days ago
- +1 more Tags
Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...er conclude: SynChro is a fast, efficient and user-friendly tool to reconstruct synteny blocks between (compl...levels of synteny conservation. Despite a very simple algorithm, the reconstruction is highly congruent with r...1599 days ago
Comment on "Bio++ : C Language libraries for your biological need"
...uild a phylogenetic tree according to several model of evolution and reconstruction methods).bppML (Optimize a...rding to a phylogenetic tree and an evolutionary model).bppAncestor (Reconstruct ancestral sequences).bppConse...3831 days ago
