Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a collection of contiguous genes located on the same chromosome. These block regions have...2614 days ago
List of Research Institutes in India (Biological Sciences/ Biotechnology)
A laboratory (normally lab) is a facility that provides controlled conditions in which scientific or technological research, experiments, and measurement may be performed....2367 days ago
List of cancer genomics research web resources !
Major web resources for cancer genomics research CGHub https://cghub.ucsc.edu/ Comprehensive data repository; huge data size EGA https://www.ebi.ac.uk/ega/ Comprehensive...2324 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken into 6kbp pieces and mapped independently. Code: $ mapPac...2274 days ago
New Machine Learning Packages in R
Machine Learning autokeras v1.0.1: Implements an interface to AutoKeras, an open source software library for automated machine learning. See README for...1503 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Arang Rhie)● PanGenie – algorithm that lever...995 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...http://ingap.sourceforge.net/inGAP is also useful for finding structural variants between genomes from read mappings. Genome finishing tools:Semi-automated gap fillers:Gap filler - http...1208 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch?v=s3JldKoA0zw This two minute video will change your mind on reproducible research 2. Parallel se...544 days ago