List of cancer genomics research web resources !
...repository; huge data size COSMIC http://cancer.sanger.ac.uk Largest somatic mutation database; genome seq...cancer SomamiR http://compbio.uthsc.edu/SomamiR/ Correlation between somatic mutation and microRNA; genome...2334 days ago
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List of Bioinformatics Software Tools for Next Generation Sequencing
...tumor & normal), annotated as germline or somatic; also has single sample mode..., another file contains link to viewer Somatic Callers Cake Descriptio...Cancer-specific High-throughput Annotation of Somatic Mutations; Last updated May 2...2922 days ago
Webinar on 'An integrated RNA and DNA approach to unravel genetic regulation in cancer'
...ariant analysis and RNA-Seq analysis enables one to investigate the consequences of genomic changes in the RNA transcripts including germline and somatic changes, imprinting, RNA edit...3384 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...he specification of custom UMI protocols. “For liquid biopsies and low-grade FFPE samples, UMI support in DNA-Seq enables the detection of somatic variants at low concentration...2399 days ago
A computational postdoc position and a bioinformatician position
...olved in the design and implementation of strategies to study the role of inherited polymorphisms in combination with timedependent variables and somatic events on cancer genesis, pro...2312 days ago
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Severus: a somatic structural variation (SV) caller for long reads
Severus is a somatic structural variation (SV) caller for long reads (both PacBio and ONT). It is designed for matching tumor/normal analysis, supports multiple tumor samples, and produces accurate and complete somatic and germline calls. Severus takes advantage of long-read phasing and uses the ...Tags: Severus, somatic, structural, variation, SV, caller, long reads
48 days ago
ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 samples (recommended amount - 40 since we estimate variances from the data). By "cohort" we mean samples sequenced ...Tags: ClinCNV, Detection, copy, number, changes, Germline, Trio, Somatic, NGS, data
1583 days ago