Results for "steps"
Bio-Scripts
Extract ids from file with perl
...@cells = split /\t/, $_; $idHash{$cells[0]}=$.; push @allIds, $cells[0]; } #Delete the last id for secutiry -- might does not finish all steps delete $hash{$allIds[-1]};...2612 days ago
- ...eqPipelineSpark Combined tool that performs all steps: read filtering, microbe refe...park BQSRPipelineSpark (BETA Tool) Both steps of BQSR (BaseRecalibrator and...
2079 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloads/autoConTAMPR/bin$ sudo apt install libpar-packer-perl Reading package lists... Don...1515 days ago
Set up WGD environment using conda !
...llowing software #BLAST #MCL #MUSCLE/MAFFT/PRANK #PAML #PhyML/FastTree #i-ADHoRe #Creat the conda ENV and install its deps #Follow the steps (base) ➜ wgd git:(master)...1207 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...re-3.0.01.tar.gz from https://wdiceryfd4rjn74bjhhtz2k5di--bioinformatics-psb-ugent-be.translate.goog/webtools/i-adhore/licensing/ #Follow these steps (wgd) ➜ i-adhore-3.0.01 g...1207 days ago
Steps to install Conda on Linux !
Download the installer: Miniconda installer for Linux. ( https://docs.conda.io/en/latest/miniconda.html#linux-installers ) Anaconda installer for Linux. ( https://...1186 days ago
Corona variant calling steps !
#!/bin/bash FILE_PATH="data/trimmed_fastq_small/" find "$FILE_PATH" -name "*.fasta" | while IFS= read -r my_file do filename=$(basename "$my_file") basena...1049 days ago
- ...DE] [--version] [FATAL ERROR] BWISE requires at least a read file To find out why, try `Bwise --help` and/or check the logs files of the various steps of the pipeline (logs/logBloo...
994 days ago
- #Installing MySQL on Ubuntu #To install MySQL on your Ubuntu server follow the steps below: First, update the apt package index by typing: sudo apt update #Then install the...
923 days ago
- ...GFF file contains information about the #features (such as genes) in the genome, including their locations and annotations. #The outline of the steps : #Parse the GFF file to e...
98 days ago
