Results for "structural variation"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...tifying uncharacterized genes, putative regulatory elements and novel structural features of study species by...parative genomic tool: It assists biologists in analysing the genomic variations that correlate with pathogen...2604 days ago
Dynamic chromosome breakpoints !!!
...he copy number of hundreds or even thousands of genes. The second are structural abnormalities which can be un...ve some evolutionary importance and considered as a driver of genetic variation. Moreover, the chromosome bre...3547 days ago
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Bookmarks
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University p...sis pipelines Detecting and annotating genetic variations using the HugeSeq pipeline&n...p; 10.1186/1471-2164-12-285 A framework for variation discovery and genotyping usin...3481 days ago
A Brief Bioinformatics Tutorial
This is about how to use a computer to find what is known about a gene of interest and also how to get new insights a...The Structure part is about molecular visualization, homology modeling and structura...3631 days ago
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Files
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour which is recognized as a complex...ing SNPs on the basis of SNP quality, coverage of SNP allele, functional and structura...3783 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha helical membrane protein (MPs) has hindered thus far the development of reliable knowledge &ndash...3939 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quali...for the Velvet de novo sequence assembler. Assemblet 0.1 – Antigenic Variation AssemblerAssemblet is a...2680 days ago
Awesome perl frameworks, libraries and software - PART 2
licheng/gccfilter - gccfilter is a perl filter to colorize and simplify (...exercism/xperl5 - Exercism Exercises in Perl 5 Ensembl/ensembl-variation - The Ensembl Variation Perl API and SQL schema eiro...2488 days ago
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Top-level pages
- "Bioinformatics is a science of biological predictions and analysis" -- ...n databases, sequence analysis, and structural bioinformatics. Organizing b...d by the Research Collaboratory for Structural Bioinformatics). Organism spe...ure determination necessary for the structura...
3941 days ago
List of Bioinformatics and Computational Biology Journals
Hi Bioinformatician and Computational Biologist, this is the comprehensive list of all (?)...tional Intelligence in Bioinformatics Journal of Structural and Functional Genomics Jour...Discovery The EMBO Journal Current Opinions in Structura...3722 days ago
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Wire posts
News
- Key finding: rs1426654 SNP of SLC24A5 gene is decider of skin pigmentation variation in South Asia rs1426654-A al...
3820 days ago
- Illumina, Inc. announced Tuesday that its new HiSeq X Ten Se...nstitutions focused on the discovery of genotypic variation to enable a deeper understand...cing, delivering a comprehensive catalog of human variation within and outside coding reg...
3756 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...systems it will be critical to establish a link between sequence variation, functional variation, gene/protein expression and...te will be in charge of the detection of polymorphisms including structural variants, of the comparison...3943 days ago
- van Noort Group is looking for PhD fellows We currently access an unprecedented know...its: ethanol and high temperature tolerance. For both organisms both natural variation and the outcomes of experimen...
3943 days ago
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ResearchLabs posts
- ...lopment of understanding in human disease. Research Area: Analysis of Next Generation sequence data in cancer Methods for analysis of structural variation in cancer genomes Next Gener...
3942 days ago
- Our research aims to better understand how living systems respond to chemical agents. A...the response to chemical exposure is modulated by genetic and physiological variation among individuals and how thi...
3942 days ago
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Video
Interview Mark Sansom (U. Oxford): Simulations of Membrane Proteins
Workshop in Bioinformatics, 4/June/2012 Campus Vida's Research Centers organize in Santiag...oinformatics. This event addressed issues such as structural bioinformatics, biological mo...k Sansom (University of Oxford), belonging to the Structura...3857 days ago
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
Full Lecture Abstract Creating an Evidence Engine to Support Personalized Medicine Pe...approaches have been extended to systematically identify insertion/deletion variation, translocations, and rearrang...3865 days ago
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Bio-Scripts
- ...llects read metrics relevant to structural variant discovery Calcul...------------------------------ Structural Variant Discovery:...Extracts evidence of structural variations from reads FindBreakpoi...uctural variants StructuralVariationDiscoveryPipelineSpark (BET...
2069 days ago
Pack a perl program with their dependencies on Ubuntu !
...arch and explore protein-ligand structural patternsBy Neelam Jha yesterd...alizesearchexploreprotein-ligandstructuralpatterns gdblab.com -...#64;jit.aber SvABA: Structural variation and indel detection by local...go SvABAStructuralvariationindeldetectionlocalassembly...1505 days ago
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Groups
BioInformatics National Certification (BINC)
BINC (BioInformatics National Certification) is an initiative of Department of Biotechn...imparting courses in Bioinformatics in India. However, there exists a large variation in the course contents, train...3917 days ago
Ruby is a dynamic, reflective, general-purpose object-oriented programming language that combines syntax inspired by...or DNA and protein sequence analysis, alignment, database parsing, tools for structura...3914 days ago
Tags
Illuminating next generation sequencing data with Go
Another good lecture for Illumina sequencing data analysis from Dan Kortschak, Bioinformatics Group, School of Molecular and Biomedical Science ,The University of AdelaideTags: Illumina, sequencing, discordant read pairs, structural variation
3902 days ago
Ribbon: Visualizing complex genome alignments and structural variation:
Ribbon can be used for long reads, short reads, paired-end reads, and assembly/genome alignments. Instructions for each data format are available by clicking on "instructions" in each tab on the right. Local installation: You can install Ribbon locally from Github by following the instructions ...Tags: Ribbon, Visualizing, complex, genome, alignments, structural variation
2343 days ago
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Comments
Comment on "Structural variation: the hidden genomic treasure"
I like this tool GRIDSS: the genomic rearrangement identification software suite. A high-speed next-gen sequencing structural variation caller. GRIDSS calls variants based on align...2697 days ago
