1139 days ago
Bioinformatics PhDs - Cover Letter
OverviewThe reception your cover letter will receive is mo...their third book has been published and Yale comes calling. They often don't seem...and, perhaps more to the point, Yale rarely "comes calling." An even greater burde...3365 days ago
Calling narrow and broad peaks from ChIP-Seq data
Know about the state-of-the-art algorithms implemented in Strand NGS for detecting the...ification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from C...3196 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found that i...1145 days ago
Next Generation Sequencing (NGS) Tutorials
...a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequenc...aining-activities-schedule/archive-2013.html Variant Detection (Model organism) Ad...1CuKkKylVDb03tnN7RSWl5EUzleetn0ctjmvaidPKLxM Variant Detection Introductory tutori...3486 days ago
Bioinformatics approach to Boar Taint
...onable to many consumers. Detected functional variant(s) underlying boar taint comp...y using Bowtie2. Alignment file then used for calling SNPs and InDels inside previo...SSC5,13, and 7 with the aid of FreeBayes , a variant caller tool. A final list of...3788 days ago
3943 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads...ds in a SAM file and a set of variant calls in VCF format, HAPCOMPA...Genome Shotgun Assembler and Variant CallerDISCOVAR is a whol...ion and Assembly of Insertion VariantsMindTheGap is a software...2684 days ago
Awesome perl frameworks, libraries and software - PART 2
licheng/gccfilter - gccfilter is a perl filter to colorize and simplify (or exp...tlayer/softlayer-api-perl-client - A set of Perl libraries that assist in calling the SoftLayer API. singingfi...2493 days ago
3945 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...e package] Comparing genomes and assemblies; variant detection Versatile and ope...al, Genome Biol 10(11):R134, 2009 Full Text Calling SNPs without a reference sequ...formatics 26(6):722-9, 2010. Full Text vipR: variant identification in pooled DNA...3778 days ago
3545 days ago
Roche has acquired Bina Technologies !!!
...y based in California. The biotech’s first product was the Bina Box, a platform for secondary genomic analysis, sequence alignment, and variant calling, but since 2012, it has devel...3413 days ago
Human Genome Meeting 2014, Geneva, Switzerland
The spectacular advances of the last few years resulted in the rapid analysis of the genome sequence of each individ...faced with the enormous challenges of assigning pathogenicity to each genomic variant...3879 days ago
Research Associate @ INDIAN INSTITUTE OF SPICES RESEARCH
INDIAN INSTITUTE OF SPICES RESEARCH (Indian Council of Agricultural Research) Mariku...m marks prescribed by the Institute in written test only will be eligible for calling for the interview. The number...3769 days ago
2074 days ago
2059 days ago
Comment on "Calling variants in non-diploid systems"
FreeBayes is widely used for calling variants in diploid systems. However, it can also be used for calling variants in pooled samples where the number of samples is...bsp;option of FreeBayes to generate frequency-based variant calls as well as some other o...1042 days ago
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-en...bilistic framework for structural variant discovery. [ paper-2014&...;] manta – Structural variant and indel caller for mapped s...e – structural variant calling and genotyping with existing...1141 days ago