Results for "wrapper"
Blogs
BBTools for bioinformatician !
...an only run single-ended or paired-ended in a single run, but it has a wrapper that can accomplish it, like...tinuity information (L50, N50, etc), you can run stats on each or statswrapper on all of them: Code: sta...2282 days ago
Bookmarks
- Citrus Perl is a binary distribution of Perl created for GUI application developers. The distribution includes wxPerl, the Perl wrapper for wxWidgets. Where supported by the operating system wxWidgets is available as a package for the 2.8.x stable branch and the 2.9.x development branch.
3928 days ago
OPERA : Optimal Paired-End Read Assembler
...enchmarks, it has significantly improved corrected N50 and reduced the number of scaffolding errors. Furthermore, our latest release contains the wrapper script OPERA-long-read that e...2807 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...0.2.3 beta – Assembling large Genomes from Short Read SequencesCurtain is an assembler of next generation sequence. Curtain is a Java wrapper around next-generation assemb...2697 days ago
Awesome perl frameworks, libraries and software - PART 2
...p5-win32-unicode - perl unicode-friendly wrapper for win32api. VerbalExpressi...on proximity analysis tool dermesser/fastcgi-wrappers - This repository conta...sparky/perl-Net-Curl - Object-oriented wrapper for libcurl sludin/http2-per...2506 days ago
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Top-level pages
Genome Assembly Tools and Software - PART1 !!
...uper contigs of sequences joined by N-bases) using the homology provided by a closely related reference sequence. Scaffold_builder is an advanced wrapper for Nucmer, written in Python...2697 days ago
Awesome perl frameworks, libraries and software - PART 1
...eywords to perl, in perl petdance/html-tidy - HTML::Tidy, a Perl wrapper about libtidy libwww-perl/UR... - JSON Schema implementation for Perl worldmind/perlqual - Wrapper for some tests for Perl code...2501 days ago
News
- pybedtools is a Python wrapper for Aaron Quinlan's BEDtools programs (https://github.com/arq5x/bedtools), which are widely used for genomic interval manipulation or "genome algebra...
3558 days ago
Bio-Scripts
Commands to install conda in Ubuntu !
...ash functions (such as SHA256 and RIPEMD160), a nd various encryption algorithms (AES, DES, RSA, ElGamal, etc.). pyopenssl A thin Python wrapper around (a subset of) the Open...1523 days ago
Print in terminal with python !
#!/usr/bin/env python import time import curses def pbar(window): height, width = window.getmaxyx() for i in range(10): window.addstr(height -1, 0, "[" + ("=" * i) + ">" + (" " * (10 - i )) + "]") window.refresh() time.sleep(0.5) curses.wrapper(pbar)990 days ago
Tags
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver, eSC also automatically creates statistical summaries of the simulation as it runs including text and image files. Also...Tags: jobTree, python, wrapper, genome, simulation, tool, suite, Evolver
2351 days ago
PilonGrid: parallel wrapper around the Pilon framework
The distribution is a parallel wrapper around the Pilon framework The pipeline is composed of bash scripts, an example mapping.fofn which shows how to input your fastq files (you give paths to the R1 file), and how to launch the pipeline.Tags: PilonGrid, parallel, wrapper, Pilon, framework
1982 days ago
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Comments
- ...ystem (historically known as “Solexa”), SolexaQA now also supports Ion Torrent and 454 data. Trim galore! Trim_galore is a wrapper script to automate quality an...
2149 days ago
