BOL

sudo find /tmp -type f -atime +10 -delete #Delete all tmp files created within 10 days #Linux

#Search a #genome sequence for secondary #metabolite biosynthetic gene clusters https://antismash.secondarymetabolites.org/#!/start

Alignment algorithms http://vlab.amrita.edu/?sub=3&brch=274&sim=1431&cnt=1 #Alignments #Algo #Blast

Bioinformatics Laboratories https://www.crick.ac.uk/research/labs?topic=19 #Lab #Bioinfo

Bioinformatics online tutorial https://bioinformaticsonline.com/pages/view/1537/virtual-bioinformatics-online-tutorial #Bioinformatics #Tutorial

Interesting plotting options in R https://www.r-graph-gallery.com/ #plot #graph #R

Ribbon genomics http://genomeribbon.com/ #Visualization #Ribbon #Graph #Genome #BAM #SAM #Mummer

Selfish genetic elements https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007700 #genetics #selfish #genome

Free opensource VPN software for mac https://tunnelblick.net/index.html #mac #vpn

Bioinformatics faculty jobs at https://www.vu.nl/en/employment/vacancies/2018/18405ASSISTANTPROFESSORBIOINFORMATICS.aspx #Bioinformatics #Jobs

#Programming exercises for the Stanford Unsupervised Feature Learning and #Deep #Learning #Tutorial http://ufldl.stanford.edu/tutorial https://github.com/amaas/stanford_dl_ex

#Intersect your bed data with coverage $ bedtools genomecov -ibam aln.bam -bga | awk '$4==0' | bedtools intersect -a cds.bed -b - -f 1.0

> pchisq(15, df=2, lower.tail=FALSE); [1] 0.0005530844 #Chi-square #R #P-value

Understanding Alignments https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session5-alignedReads.html #Understanding #Alignments

Louvain algorithm https://neo4j.com/docs/graph-algorithms/current/algorithms/louvain/ #Louvain #algorithm