BOL

Learn algorithms https://github.com/rushter/MLAlgorithms #Algorithms #Learn

Filtration https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads

Definition of homologous #synteny blocks http://science.sciencemag.org/content/sci/suppl/2005/07/20/309.5734.613.DC1/Murphy.SOM.pdf

BOL wish you a very happy new year. #BOL #BOLover #2018 #Wish

https://biojs.net/ - A library of over hundred JavaScript components enabling you to visualize and process data using current web technologies #JS #Visualisation #OpenSource

Bioinformatics tools collection and database https://bio.tools #tools #database #search #list

A next generation web framework for the Perl programming language- http://mojolicious.org/ #WebDev #MVC

Bioinformatics opportunity for AU, India students http://allduniv.ac.in/ckfinder/userfiles/files/Final%20Advt%20171117.pdf #AU #Allahabad #Opportunity

http://www.bioinfogeeks.com/ #bioinfo #forum

https://support.bioconductor.org/t/Jobs/ #bioinfo #jobs

Bioinformatics blog http://onetipperday.sterding.com/ #Blog

Beginner’s guide to comparative bacterial genome analysis using next-generation sequence data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630013/ #Bacteria #NGS #Comparative #Genomics

#Remove a #sequence by id from multifasta: cat vaga.fa | awk '{if (substr($0,1) == ">scaffold_1 1087316 bp") censor=1; else if (substr($0,1,1) == ">") censor=0; if (censor==0) print $0}' > fixed.fasta

awk 'BEGIN {RS = ">" ; FS = "\n" ; ORS = ""} {if ($2) print ">"$0}' all_p_ctg.fa > all_p_ctg_CORRECTED.fa #remove #empty #clean #fasta

Remove duplicate fasta ids: awk '/^>/{f=!d[$1];d[$1]=1}f' in.fa > out.fa #duplicate #fasta #ids