BOL

All R packages for time series analysis- https://cran.r-project.org/web/views/TimeSeries.html

Complete and excellent tutorial for Single Cell Sequencing- https://hemberg-lab.github.io/scRNA.seq.course/index.html

List of excellent scRNA-seq analysis tools- https://github.com/seandavi/awesome-single-cell

Marginal plot in R https://stackoverflow.com/questions/8545035/scatterplot-with-marginal-histograms-in-ggplot2 #R #Plot #Marginal

Why are de Bruijn #graphs useful for #genome #assembly? https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5531759/

Store all files in a array using perl: my @filesbwa = <$base_name/reads/$base_name.$library.bwa.*fa> #Store #Keep #Array #Perl

#Error filtering, pair assembly and error #correction for next-generation sequencing #reads https://academic.oup.com/bioinformatics/article/31/21/3476/194979

Remove the unwanted characters from Fasta file: sed -e '/^[^>]/s/[^ATGCatgc]/N/g' infile.fa #sed #unwanted #illegal #remove #correct #fasta #linux

Remove the fasta with zero size: awk 'BEGIN {RS = ">" ; FS = "\n" ; ORS = ""} $2 {print ">"$0}' input.fas > output.fas #fasta #remove

Bioinformatics JRF at IIT https://www.iitr.ac.in/administration/uploads/File/bt/2017/adv30112017.pdf #JRF

Linux command to find the file contains a string "LOCK_EX": grep -Ril "LOCK_EX" / #Root #Find #Linux #Grep #search

Random forest algorithms http://blog.yhat.com/posts/random-forests-in-python.html #forest #random #algo

Understanding MinION data https://porecamp.github.io/2016/tutorials/PoreCamp2016-02-MinIONData.pdf #data #understand #learn

Fastq 2 fasta. $ sed -n '1~4s/^@/>/p;2~4p' test.fastq > test.fasta #fastq #fasta #convert

3D-Jury: a simple approach to improve protein structure predictions #Protein #Predict #Structure https://academic.oup.com/bioinformatics/article/19/8/1015/235399