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Scripts for Phylogenetics at https://github.com/gigascience/paper-jarvis2014 #Phylogenetics #Script #Perl

Replace space with tab. $ awk -v OFS="\t" '$1=$1' file1 #tab #space #replace #awk

Reasonably fast method to compute the #patristic #distance between a pair of #species in a large tree http://blog.phytools.org/2015/10/new-reasonably-fast-method-to-compute.html

#Phylogenetics #analysis https://bip.weizmann.ac.il/education/course/introbioinfo/03/lect12/phylogenetics.pdf

Reformat you fasta sequence with size. $ seqkit seq -w 50 allGenomeContacted.fa > allGenomeContacted_final.fa #Reformat #Fasta #Size

Remove unwanted character from fasta file. $ sed -e '/^[^>]/s/[^ATGCatgc]/N/g' file.fa #IUPAC #Special #Character #Remove

Print each command before executing? Bash script to print each command before executing. $ bash -x myscript.sh #Print #Command #Bash

https://www.r-bloggers.com/hacking-strings-with-stringi/amp/ #stringi #r #string

New DBT announcement at http://www.dbtindia.nic.in/out-reach/latest-announcements/ #DBT #Announcement #GOI

Molecular Recording https://www.youtube.com/watch?v=o8ONjPHLr6s #DNA #Recording #Store

The gene drive bubble: New realities http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1006850 #Genes #Drive

Bioinformatics faculty WalkIn https://www.pdkv.ac.in/Recruitment/wii-teachervncab-040717.pdf #WalkIn #Bioinformatics

Remove "|" from fasta header. $ sed 's,|,_,g' -i file.fa #fasta #header #sed

Remove unwanted character from fasta file. sed -e '/^[^>]/s/[^ATGCatgc]/N/g' file.fa #fasta #file #header #charater

Evolution and phylogeny software http://tree.bio.ed.ac.uk/software/ #tools #software #phylogeny #evolution