BOL

One can evaluate the accuracy of a mapper or a SNP caller with wgsim_eval.pl that comes with the package. #Evaluate #Mapping #SNP

Understanding PairedEnd(PE) mapping https://davetang.org/muse/2014/07/24/getting-started-paired-end-reads/ #PE #Paired #End #PairedEnd #Mapping #Map #Learn

Basics for assembly http://ged.msu.edu/angus/files/lecture4-mapping.pdf #Genome #Mapping #Assembly #PPT

#Mapping #sequencing #reads to a #reference #genome with #Bowtie2: a step-by-step guide https://insidedna.me/tutorials/view/how-to-use-bowtie2-read-mapping

Maq: Mapping and Assembly with Qualities http://maq.sourceforge.net/ #Maq #Mapping #Assembly #Qualities