BOL

NGS alignment and variant calling tutorial https://github.com/ekg/alignment-and-variant-calling-tutorial #NGS #variant #snp #tools #tutorial #calling

One can evaluate the accuracy of a mapper or a SNP caller with wgsim_eval.pl that comes with the package. #Evaluate #Mapping #SNP

polySNP: an analysis tool for quantitative sequencing https://www.nybg.org/files/scientists/dlittle/polySNP.html #SNP #polySNP #analysis #peak #Area

Variant calling https://www.ebi.ac.uk/training/online/course/human-genetic-variation-i-introduction/variant-identification-and-analysis/what-variant #variant #snp #tutorial

https://gatkforums.broadinstitute.org/gatk/discussion/1268/what-is-a-vcf-and-how-should-i-interpret-it #VCF #vcf #SNP

Bioinformatics tutorial https://jasonjwilliamsny.github.io/wrangling-genomics/01-automating_a_workflow.html #Workflow #Tutorial #BAM #SAM #SNP

#FreeBayes tool for #SNP http://weatherby.genetics.utah.edu/UGP/wiki/index.php/FreeBayes_Variant_Protocol#Local_Realignment_of_Indels

http://bioinfo.life.hust.edu.cn/lncRNASNP/ #long #noncodingRNA #SNP

http://csg.sph.umich.edu/kang/MetaboChip/ #SNP #metabolic #atherosclerotic #cardiovascular #disease #traits

http://manuals.bioinformatics.ucr.edu/workshops #NGS #R #ChemInfo #RNA #ChiP-Seq #DNA #SNP

Pool-seq http://www.nanowerk.com/news2/biotech/newsid=37776.php #Pool-seq #aging #Evolution #Selection #snp

http://sourceforge.net/projects/atlas2/ #SNP #Exome #Indels

WGS/WES Mapping to Variant Calls - Version 1.0! http://www.htslib.org/workflow/ #Omics #NGS #WGS #SNP

galign: A Tool for Rapid Genome Polymorphism Discovery http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2746318/ #SNP #Variation #galign #Genome

Validated whole genome structural variation detection using multiple callers http://bcbio.wordpress.com/ #VariationCalling #Genome #SNP