Results for "Enrichment analysis"
Blogs
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analys...abbit hole and possibly never getting a solution. Learn to perform root cause analysis, learn enough about the under...3941 days ago
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of data and t...UI software for computational analysis? Should I use commercial bioi...to accomplice your biological analysis work. This means that if you...3698 days ago
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Bookmarks
- I bet, this website will be your best friend in near future. This helps us to explore th...from it. You can find some useful open source bioinformatics codes for your analysis work. You can use the left ba...
3906 days ago
Rdatamining.com : R and Data Mining
This website presents examples, documents and resources on data mining with R. Documents...for Data Mining, R and Data Mining: Examples and Case Studies and Time Series Analysis and Mining with R.3906 days ago
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Files
- Bioinformatician life is interconnected, they always dream for a powerful server, little more space on server as they are generating lots of data per run, dream to publish results in good impact journals, meetings reminders :) and research analysis off course!!!
3900 days ago
- Some fish kidnaped a bioinformatician for their genome analysis.
3844 days ago
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Discussion topics
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing the G...ised MinION™ device. These are a new generation of electronic molecular analysis system for use in scientific...3804 days ago
Want to Know which genome assembler rule the world ?
Assemblathon 2: evaluating de novo methods of genome assembly http://www.gigascie...ts-soul-searching.html http://assemblathon.org/post/44431915644/feedback-and-analysis-of-the-assemblathon-2-p &nbs...3910 days ago
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Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempt...r Bioinformatics, including sequence analysis,phylogenetics, molecular evol...he libraries are as follows:Sequence analysis Sequence and Site objects, w...a set of C++ libraries for sequence analysis, phylogenetics, molecular evo...3938 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing,...3938 days ago
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Top-level pages
- The completion of the first human genome drafts was just a start of the modern DNA seque...the fast growing HT-NGS technologies, the main challenge is to cope with the analysis of vast production of sequenc...
3938 days ago
- "Bioinformatics is a science of biological predictions and analysis" -- Jitendra Narayan "T...to provide raw data for later analysis. Once the raw data are availa...of protein domains. Combined analysis of structural and genomic dat...
3938 days ago
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Wire posts
News
R package for visualising GO enrichment
An R package that visualizes the GO enrichment results as word clouds and arranges them together with figures of experimental data. This allows us to draw informative summa...3930 days ago
- PhylomeDB is a public database for complete collections...y and paralogy predictions which are based on the analysis of the phylogenetic trees. Th...ims at providing a high-quality phylogenetic analysis of different genomes , i...
3909 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Clima...to analyze Next Generation Sequencing (NGS) data analysis. In the context of a flagship...omputational facilities and expertise in NGS data analysis, and will benefit as well fro...3939 days ago
- van Noort Group is looking for PhD fellows We currently access an unprecedented knowl...a prerequisite for this position. Experience with high throughput sequencing analysis methods, machine learning, pr...
3939 days ago
- +196 more Opportunity posts
ResearchLabs posts
- Location :European Molecular Biology Laboratory (EMBL), Heidelberg, Germany. Our long..., with an emphasis on mitosis. We develop in-vitro assays, quantitative image analysis and cytosim, a computer simul...
3939 days ago
- Melanie Bahlo is an applied statistician working in the areas of statistical genetics, b...pedigrees Investigation of DNA sharing in distantly related individuals CNV analysis in pedigrees and connections...
3938 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data Air...will soon outstrip advances in computing power to perform current methods of analysis. Extracting new science from...3893 days ago
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming t...tion strain Bacillus subtilis. Until now, genome analysis could only be done in nationa...-generation sequencer development has made genome analysis possible in an ordinary lab....3907 days ago
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Bio-Scripts
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be freely distributed under GNU...ated and ready for import into a spreadsheet program for browsing and further analysis. # use strict; use warni...2905 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the ref...2131 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a program...basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations welcomed. Wh...3521 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3517 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the...d genome, transcriptome, proteome, and metabolome analysis to reveal the molecular profi...t provides lots of useful tools for comprehensive analysis and comparison of high-throug...2352 days ago
Groups
R is a free software programming language and a software env...ners for developing statistical software and data analysis. R's popularity has increased...cal packages. Bioconductor provides tools for the analysis and comprehension of high-thr...3941 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of t...3898 days ago
- +4 more Groups
Tags
Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
GeneSCF is more reliable compared to other enrichment tools because of its ability to use reference functional databases in real-time to perform enrichment analysis. It is an easy-to-integrate tool with other pipelines available for downstream analysis of high-throughput data. More importantly, G...Tags: Enrichment analysis, KEGG, Gene Ontology, REACTOME, pathways, cancer enrichment, Functional annotation, Gene enrichment
2775 days ago
Comments
Comment on "List of gene ontology software and tools"
Chen EY, Tan CM, Kou Y, Duan Q, Wang Z, Meirelles GV, Clark NR, Ma'ayan A. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinformatics. 2013;128(14). http://amp.pharm.mssm.edu/Enrichr/1483 days ago
Comment on "List of gene ontology software and tools"
...;http://www.funrich.org/ . FunRich is a stand-alone software tool used mainly for functional enrichment and interaction network analysis of genes and proteins. Besides, the results of the analysis can be depicted graphically i...2885 days ago
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