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• • Jit@jit.aber

  

  Jit bookmarked Shasta long read assembler 1823 days ago

  The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells. Computational methods used by the Shasta assembler include: Using...

  https://github.com/chanzuckerberg/shasta

  Comments

  • • Neel@neelam

    

    Neel 1800 days ago

    Latest release are here https://github.com/chanzuckerberg/shasta/releases
• • LEGE@lege

  

  LEGE commented on a bookmark Next Generation Sequencing (NGS) Tutorials in the group Next Generation Sequencing (NGS) 1823 days ago

  Informatics for RNA-seq: A web resource for analysis on the cloud https://github.com/griffithlab/rnaseq_tutorial?
• • Rahul Nayak@rahul

  

  Rahul Nayak commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 1825 days ago

  Bioinformatics journals list on springer https://link.springer.com/search/page/1?facet-subject=%22Bioinformatics%22&facet-content-type=%22Journal%22
• • Neel@neelam

  

  Neel bookmarked heatmaply: popular graphical method for visualizing high-dimensional data 1826 days ago

  This work is based on ggplot2 and plotly.js engine. It produces similar heatmaps as d3heatmap, with the advantage of speed (plotly.js is able to handle larger size matrix), and the ability to zoom from the dendrogram. heatmaply also provides an...

  http://talgalili.github.io/heatmaply/articles/heatmaply.html
• • BioStar@biostar

  

  BioStar commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 1829 days ago

  Australian bioinformatics jobs at https://www.wehi.edu.au/about/career-opportunities
• • Shruti Paniwala@shruti

  

  Shruti Paniwala commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 1830 days ago

  Bioinformatics jobs at https://www.sunhired.com/?q=bioinformatics&l=
• • Shruti Paniwala@shruti

  

  Shruti Paniwala commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 1830 days ago

  Bioinformatics jobs at https://thenode.biologists.com/?s=bioinformatics&category_name=jobs
• • Jit@jit.aber

  

  Jit bookmarked NextDenovo: string graph-based de novo assembler for TGS long reads 1832 days ago

  NextDenovo is a string graph-based de novo assembler for TGS long reads. It uses a "correct-then-assemble" strategy similar to canu, but requires significantly less computing resources and storages. After assembly, the per-base error rate...

  https://github.com/Nextomics/NextDenovo
• • Shruti Paniwala@shruti

  

  Shruti Paniwala commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 1832 days ago

  Bioinformatics jobs in USA https://jooble.org/jobs-bioinformatics
• • Shruti Paniwala@shruti

  

  Shruti Paniwala commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 1832 days ago

  Bioinformatics job at https://www.isme-microbes.org/job-adverts
• • Jit@jit.aber

  

  Jit bookmarked RePS: Repeat-masked Phrap with scaffolding, a WGS sequence assembler 1833 days ago

  RePS (Repeat-masked Phrap with scaffolding), a WGS sequence assembler, that explicitly identifies exact kmer repeats from the shotgun data and removes them prior to the assembly. The established software Phrap is used to compute meaningful error...

  ftp://ftp.genomics.org.cn/pub/ricedb/Tools/RePS/RePS-IBM-AIX.tar.gz
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 1833 days ago

  BioPython tutorial http://biopython.org/DIST/docs/tutorial/Tutorial.html #BioPython #Tutorial
• • Shruti Paniwala@shruti

  

  Shruti Paniwala bookmarked DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies 1833 days ago

  DeCoSTAR computes adjacency evolutionary scenarios using a scoring scheme based on a weighted sum of adjacency gains and breakages. Solutions, both optimal and near-optimal, are sampled according to the Boltzmann–Gibbs distribution centered...

  https://github.com/YoannAnselmetti/DeCoSTAR_pipeline
• • Jitendra Narayan@admin

  

  Jitendra Narayan posted a new ad in the Opportunity 3 PhD positions available in the area of Bioinformatics/Computational Biology at ulster.ac.uk 1834 days ago
• • Jitendra Narayan@admin

  

  Jitendra Narayan posted to the wire 1834 days ago

  12 new chapters and 365 opportunities to do things right, correct your mistakes, go after your dreams. Happy New Year 2020 #BOLover #2020 #HappyNewYear
• • BioStar@biostar

  

  BioStar published a news post Artificial intelligence is more accurate than doctors in diagnosing breast cancer 1835 days ago

  Artificial intelligence is more accurate than doctors in diagnosing breast cancer from mammograms, a study in the journal Nature suggests.
• • Neel@neelam

  

  Neel commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 1836 days ago

  Bioinformatics jobs at Liverpool https://my.corehr.com/pls/ulivrecruit/erq_search_version_4.start_search_with_params
• • Jit@jit.aber

  

  Jit commented on a bookmark Machine learning training and courses in bioinformatics ! 1836 days ago

  Deep learning in bioinformatics @ https://arxiv.org/pdf/1603.06430.pdf
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked Machine learning training and courses in bioinformatics ! 1836 days ago

  Machine learning techniques have been successful in analyzing biological data because of their capabilities in handling randomness and uncertainty of data noise and in generalization. In this class, we will learn basics about probabilistic models...

  http://homes.sice.indiana.edu/yye/lab/teaching/spring2017-I529/

  Comments

  • • Jit@jit.aber

    

    Jit 1836 days ago

    Deep learning in bioinformatics @ https://arxiv.org/pdf/1603.06430.pdf
• • Rahul Nayak@rahul

  

  Rahul Nayak posted to the wire 1836 days ago

  #PostDoc #opportunity at Finland https://predatorpreyinteractions.com/opportunities/

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