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• • BioStar@biostar

  

  BioStar posted to the wire 2228 days ago

  Bioinformatics online tutorial https://bioinformaticsonline.com/pages/view/1537/virtual-bioinformatics-online-tutorial #Bioinformatics #Tutorial
• • Jit@jit.aber

  

  Jit commented on the blog List of motif discovery tools ! 2232 days ago

  Bioinformatics for Beginners https://www.coursera.org/learn/bioinformatics which can help with learning the basics of the algorithms underpinning motif discovery.
• • Jit@jit.aber

  

  Jit commented on the blog List of motif discovery tools ! 2232 days ago

  Motif algorithms  This link on Nature explain: how does DNA sequence motif discovery work? Paper on BMC bioinformatics: survey of DNA motif finding algorithms This paper discusses some limitations and potentials of motif...
• • Jit@jit.aber

  

  Jit commented on a bookmark SAM flags 2232 days ago

  Understaning SAMtools http://www4.ncsu.edu/~rosswhet/BIT815/Overview/Week2/SAMformatAndCLtools.pdf 
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh posted to the wire 2232 days ago

  Interesting plotting options in R https://www.r-graph-gallery.com/ #plot #graph #R
• • BioJoker@biojoker

  

  BioJoker created a new bio-script Sync github repo 2232 days ago
• • BioJoker@biojoker

  

  BioJoker is now a friend with Jitendra Narayan 2234 days ago

  • BioJoker@biojoker

  

  • Jitendra Narayan@admin

  
• • Jitendra Narayan@admin

  

  Jitendra Narayan is now a friend with BioJoker 2234 days ago

  • Jitendra Narayan@admin

  

  • BioJoker@biojoker

  
• • Neel@neelam

  

  Neel bookmarked SIMBA: a Genome Assembly Project Management System 2234 days ago

  SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS)...

  http://ufmg-simba.sourceforge.net/
• • Jit@jit.aber

  

  Jit posted to the wire 2235 days ago

  Ribbon genomics http://genomeribbon.com/ #Visualization #Ribbon #Graph #Genome #BAM #SAM #Mummer
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh bookmarked SISRS: Site Identification from Short Read Sequences 2235 days ago

  Next-gen sequence data such as Illumina HiSeq reads. Data must be sorted into folders by taxon (e.g. species or genus). Paired reads in fastq format must be specified by _R1 and _R2 in the (otherwise identical) filenames. Paired and unpaired reads...

  https://github.com/rachelss/SISRS
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh posted to the wire 2235 days ago

  Selfish genetic elements https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007700 #genetics #selfish #genome
• • BioJoker@biojoker

  

  BioJoker bookmarked lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data 2237 days ago

  lordFAST is a sensitive tool for mapping long reads with high error rates. lordFAST is specially designed for aligning reads from PacBio sequencing technology but provides the user the ability to change alignment parameters depending on the reads...

  https://github.com/vpc-ccg/lordfast
• • BioJoker@biojoker

  

  BioJoker posted a new ad in the Opportunity Senior Bioinformatics Scientist at Elucidata 2237 days ago
• • Neel@neelam

  

  Neel bookmarked Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads 2237 days ago

  Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful...

  https://github.com/rrwick/Deepbinner
• • BioJoker@biojoker

  

  BioJoker uploaded the file Tree illustrating the lack of interchromosomal rearrangement of the microchromosomes. 2238 days ago

  Tree illustrating the lack of interchromosomal rearrangement of the microchromosomes. No interchromosomal microchromosome fusions from the avian ancestor unless otherwise stated (macrochromosomal fusions not listed). The overall pattern of...
• • Jit@jit.aber

  

  Jit created a new bio-script Setting up falconUnzip conda environments for genome assembly ! 2240 days ago
• • BioJoker@biojoker

  

  BioJoker has a new avatar 2241 days ago

  
• • BioJoker@biojoker

  

  BioJoker published a blog post Understating pacbio reads name ! 2241 days ago

  Pacbio file name explained !
• • BioJoker@biojoker

  

  BioJoker posted a new ad in the Opportunity Bioinformatics Programme Officer @ International Centre for Genetic ICGEB Engineering and... 2241 days ago

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