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• • Shruti Paniwala@shruti

  

  Shruti Paniwala is now a friend with Rahul Nayak 1467 days ago

  • Shruti Paniwala@shruti

  

  • Rahul Nayak@rahul

  
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked FastProNGS: fast preprocessing of next-generation sequencing reads 1467 days ago

  FastProNGS to integrate the quality control process with automatic adapter removal. Parallel processing was implemented to speed up the process by allocating multiple threads. Compared with similar up-to-date preprocessing tools, FastProNGS is by...

  https://github.com/Megagenomics/FastProNGS
• • Rahul Nayak@rahul

  

  Rahul Nayak answered the question How HiFi Reads Different from Traditional PacBio Long Reads ? 1467 days ago

  By calling consensus from subbreads produced by multiple passes of the enzyme around a circularized template, HiFi reads are generated. This results in both lengthy and effective HiFi reads. In comparison, traditional PacBio long reads are created...
• • Shruti Paniwala@shruti

  

  Shruti Paniwala asked How HiFi Reads Different from Traditional PacBio Long Reads ? 1467 days ago

  Trying to understand HiFi reads, any link could help ...
• • Jit@jit.aber

  

  Jit commented on the blog List of genome announcement, notes and reporting journals 1467 days ago

  Computational and Structural Biotechnology Journal for bioinformatics tool publication
• • Jit@jit.aber

  

  Jit bookmarked Hifiasm: a haplotype-resolved assembler for accurate Hifi reads 1469 days ago

  Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can assemble a human genome in several hours and works with the California redwood genome, one of the most complex genomes sequenced so far. Hifiasm can produce...

  https://github.com/chhylp123/hifiasm
• • Neel@neelam

  

  Neel commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 1469 days ago

  Bioinformatics jobs at https://www.invitae.com/en/careers/search
• • Neel@neelam

  

  Neel bookmarked maftools : Summarize, Analyze and Visualize MAF Files 1470 days ago

  With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer Genome Atlas Project has sequenced over 30 different cancers with sample size of...

  https://www.bioconductor.org/packages/release/bioc/vignettes/maftools/inst/doc/maftools.html
• • Shruti Paniwala@shruti

  

  Shruti Paniwala published a news post The new corona variant has 23 mutations in all, which is unusually huge ! 1470 days ago

  The new SARS-CoV-2 version, B.1.1.7, which was first seen in the third week of September in Kent and Greater London, has since spread to other locations in the UK.
• • Shruti Paniwala@shruti

  

  Shruti Paniwala bookmarked Applied Computational Genomics Course at UU: Spring 2020 1470 days ago

  This course will provide a comprehensive introduction to fundamental concepts and experimental approaches in the analysis and interpretation of experimental genomics data. It will be structured as a series of lectures covering key concepts and...

  https://github.com/quinlan-lab/applied-computational-genomics
• • Jitendra Narayan@admin

  

  Jitendra Narayan is now a friend with Prajnya 1471 days ago

  • Jitendra Narayan@admin

  

  • Prajnya@prajnyam

  
• • Prajnya@prajnyam

  

  Prajnya is now a friend with Jitendra Narayan 1471 days ago

  • Prajnya@prajnyam

  

  • Jitendra Narayan@admin

  
• • Jit@jit.aber

  

  Jit posted to the wire 1472 days ago

  Easily visualise regions of your GFF file https://fmalmeida.github.io/posts/plot-dna-features-tutorial/ #GFF #Visualize
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked GEO2R: compare two or more groups of Samples 1473 days ago

  GEO2R to compare two or more groups of Samples in order to identify genes that are differentially expressed across experimental conditions.

  https://www.ncbi.nlm.nih.gov/geo/geo2r/
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks 1473 days ago

  With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page...

  https://amp.pharm.mssm.edu/biojupies/
• • Neel@neelam

  

  Neel posted a new ad in the Opportunity Scientist-B (Bioinformatics) at AIIMS, Delhi 1473 days ago
• • Neel@neelam

  

  Neel bookmarked SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs 1473 days ago

  The first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. SneakySnake greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short...

  https://github.com/CMU-SAFARI/SneakySnake
• • Neel@neelam

  

  Neel bookmarked Liftoff: An accurate GFF3/GTF lift over pipeline 1473 days ago

  Liftoff is a tool that accurately maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require a pre-generated “chain” file as input, Liftoff is a...

  https://github.com/agshumate/Liftoff
• • Neel@neelam

  

  Neel bookmarked COVID Moonshot: An international effort to DISCOVER A COVID ANTIVIRAL 1473 days ago

  The COVID Moonshot is an ambitious crowdsourced initiative to accelerate the development of a COVID antiviral. We work in the open with no intellectual property constraints. This way, any scientist can view submitted drug designs and experimental...

  https://covid.postera.ai/covid
• • Jit@jit.aber

  

  Jit created a new bio-script Install SibeliaZ in your Linux cluster ! 1473 days ago

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