BOL

MGSE can harness the power of files generated in genome sequencing projects to predict the genome size. Required are the FASTA file containing a high continuity assembly and a BAM file with all available reads mapped to this assembly. The script...

ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 samples (recommended amount - 40 since we estimate variances from...

Binaries of ngs-bits are available via Bioconda. Alternatively, ngs-bits can be built from sources: Binaries for Linux/macOS From sources for Linux/macOS From sources for Windows

What is bioinformatics #Understanding #Bioinformatics https://academic.oup.com/bib/article/20/6/1981/5066445

This list is updated regularly https://www.mendeley.com/research-funding/opportunities?keyword=bioinformatics

Why have so many researchers embraced Facebook or Instagram pages? They understand the importance of social media and how it adds value. Now that consumers often experience interactions with companies that are not face-to-face, shifting to social...

The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells. Computational methods used by the Shasta assembler include: Using...

Informatics for RNA-seq: A web resource for analysis on the cloud https://github.com/griffithlab/rnaseq_tutorial?

Bioinformatics journals list on springer https://link.springer.com/search/page/1?facet-subject=%22Bioinformatics%22&facet-content-type=%22Journal%22

This work is based on ggplot2 and plotly.js engine. It produces similar heatmaps as d3heatmap, with the advantage of speed (plotly.js is able to handle larger size matrix), and the ability to zoom from the dendrogram. heatmaply also provides an...

Australian bioinformatics jobs at https://www.wehi.edu.au/about/career-opportunities

Bioinformatics jobs at https://www.sunhired.com/?q=bioinformatics&l=

Bioinformatics jobs at https://thenode.biologists.com/?s=bioinformatics&category_name=jobs

NextDenovo is a string graph-based de novo assembler for TGS long reads. It uses a "correct-then-assemble" strategy similar to canu, but requires significantly less computing resources and storages. After assembly, the per-base error rate...

Bioinformatics jobs in USA https://jooble.org/jobs-bioinformatics

Bioinformatics job at https://www.isme-microbes.org/job-adverts

RePS (Repeat-masked Phrap with scaffolding), a WGS sequence assembler, that explicitly identifies exact kmer repeats from the shotgun data and removes them prior to the assembly. The established software Phrap is used to compute meaningful error...

BioPython tutorial http://biopython.org/DIST/docs/tutorial/Tutorial.html #BioPython #Tutorial

DeCoSTAR computes adjacency evolutionary scenarios using a scoring scheme based on a weighted sum of adjacency gains and breakages. Solutions, both optimal and near-optimal, are sampled according to the Boltzmann–Gibbs distribution centered...