Trelliscope provides a way to flexibly visualize large, complex data in great detail from within the R statistical programming environment. Trelliscope is a component in the DeltaRho environment.
For those familiar with Trellis...
The Graphical Fragment Assembly (GFA) is a proposed format which allow to describe the product of sequence assembly. This gem implements the proposed specifications for the GFA format described under...
Written and maintained by Simon Gladman - Melbourne Bioinformatics (formerly VLSCI)
Protocol Overview / Introduction
In this protocol we discuss and outline the process of de novo assembly for small to medium sized...
Bioinformcs software are published by Genome Biology - Software section
https://genomebiology.biomedcentral.com/submission-guidelines/preparing-your-manuscript/software
MGSE can harness the power of files generated in genome sequencing projects to predict the genome size. Required are the FASTA file containing a high continuity assembly and a BAM file with all available reads mapped to this assembly. The script...
ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 samples (recommended amount - 40 since we estimate variances from...
Binaries of ngs-bits are available via Bioconda. Alternatively, ngs-bits can be built from sources:
Binaries for Linux/macOS
From sources for Linux/macOS
From sources for Windows