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- Jit@jit.aber
Jit bookmarked Nucleus: Python and C++ code for reading and writing genomics data. 1756 days ago

Nucleus is a library of Python and C++ code designed to make it easy to read, write and analyze data in common genomics file formats like SAM and VCF. In addition, Nucleus enables painless integration with the TensorFlow machine learning framework,...

https://github.com/google/nucleus
- Jit@jit.aber
Jit bookmarked BioCoder : newsletter of that revolution. It’s about biology as it moves from research labs into... 1756 days ago

BioCoder features: Novel therapeutic discovery strategies Hardware such as low-cost lab equipment or diagnostics Open or low-cost bioinformatics tools Engineered organisms for the production of small molecules, biologics, or other...

https://www.oreilly.com/biocoder/
- Jit@jit.aber
Jit posted to the wire 1756 days ago

Comparing Ensembl GTF and cDNA https://www.r-bloggers.com/comparing-ensembl-gtf-and-cdna-2/ #Comparing #Ensembl #GTF #cDNA
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 1757 days ago

https://indicanews.com/2020/02/01/budget-proposes-rs-8000-crore-boost-for-quantum-tech/ #positive #news #india #R&D
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 1757 days ago

https://onezero.medium.com/the-2020s-will-be-the-decade-of-the-bioeconomy-b722420c6bff #biotech #bioinfo #biomaterials
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 1757 days ago

https://scitechdaily.com/mit-develops-machine-learning-tool-to-make-code-run-faster/ #MachineLearning
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 1757 days ago

https://scitechdaily.com/creating-better-drugs-with-deep-learning-3d-technology-and-improved-protein-modeling/ #DL #MachineLearning #Drug #Protein #Modeling
- Jit@jit.aber
Jit bookmarked AccessSyRI: finding genomic rearrangements and local sequence differences from whole-genome... 1757 days ago

AccessSyRI: finding genomic rearrangements andlocal sequence differences from whole-genome assemblies SyRI, a pairwise whole-genome comparison tool for chromosome-level assemblies. SyRI starts by finding rearranged regions and then searches for...

https://github.com/schneebergerlab/syri
- Jit@jit.aber
Jit posted to the wire 1757 days ago

Download circos http://circos.ca/software/download/ #circos
- Rahul Nayak@rahul
Rahul Nayak posted to the wire 1757 days ago

Conda aligner env $ conda create -n aligners bwa bowtie hisat star #Aligner #Env
- Rahul Nayak@rahul
Rahul Nayak created a new bio-script Bash command to install GATK, Bedtools and SnpEff ! 1757 days ago
- Rahul Nayak@rahul
Rahul Nayak created a new bio-script Bash command to install bwa, samtools, picard ! 1758 days ago
- Rahul Nayak@rahul
Rahul Nayak created a new bio-script Bash command to install Miniconda ! 1758 days ago
- Rahul Nayak@rahul
Rahul Nayak created a new bio-script Bash commandline to install Anaconda ! 1758 days ago
- Rahul Nayak@rahul
Rahul Nayak posted to the wire 1758 days ago

Analyse your sample with GATK pipeline. https://app.terra.bio/ #GATK
- Poonam Mahapatra@poonam
Poonam Mahapatra commented on a page titled Bioinformatics Companies in India 1758 days ago

shiva scientific 140, SFS, Pocket 1 & 2, Sector-3, Dwarka, New Delhi -110078 India +91 9810764834, +91 9818853887, +91 -11- 45609647 http://www.shivascientific.in/
- LEGE@lege
LEGE bookmarked HASLR: a tool for rapid genome assembly of long sequencing reads 1758 days ago

HASLR is a tool for rapid genome assembly of long sequencing reads. HASLR is a hybrid tool which means it requires long reads generated by Third Generation Sequencing technologies (such as PacBio or Oxford Nanopore) together with Next Generation...

https://github.com/vpc-ccg/haslr
- LEGE@lege
LEGE commented on the blog How to set up SSH on Ubuntu 18.04 1758 days ago

The SSH server is not installed by default on Ubuntu desktop systems but it can be easily installed from the standard Ubuntu repositories. To install and enable SSH on your Ubuntu system complete the following steps: Open your terminal either by...
- Jit@jit.aber
Jit published a news post Complete genome sequence of Wuhan seafood market pneumonia virus is out ! 1758 days ago

On Jan 10 2020, while news of the first fatality was barely trickling in, the 29,903 letters constituting the viral genome from an affected individual in Wuhan had already been elucidated (even though a few corrections were made subsequently).
Comments
- Jit@jit.aber
  
  Jit 1754 days ago
  CBI teams at GenBank®, the Sequence Read Archive (SRA), NCBI Virus, and BLAST continue to rapidly process and release data associated with this outbreak as it becomes available. We also have a dedicated BLAST search page for Betacoronavirus sequences that includes the outbreak data. As always, we welcome new sequence data submissions.
- Jit@jit.aber
Jit bookmarked Google Colab : Google Colab is a free cloud service and now it supports free GPU! 1759 days ago

You can: improve your Python programming language coding skills. develop deep learning applications using popular libraries such as Keras, TensorFlow, PyTorch, and OpenCV. If you have just a single notebook to submit, use the...

http://colab.research.google.com

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