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Scripts for Phylogenetics at https://github.com/gigascience/paper-jarvis2014 #Phylogenetics #Script #Perl

Replace space with tab. $ awk -v OFS="\t" '$1=$1' file1 #tab #space #replace #awk

analog -- A feature that appears similar in two taxa which have originated from two different ancestors. ancestor -- Any organism, population, or species from which some other organism, population, or species is descended by...

RAMI, which clusters related nodes in a phylogenetic tree based on the patristic distance. RAMI also produces indices of cluster properties and other indices used in population and community studies on-the-fly. Availability: RAMI is licensed...

Reasonably fast method to compute the #patristic #distance between a pair of #species in a large tree http://blog.phytools.org/2015/10/new-reasonably-fast-method-to-compute.html

PATRISTICv1.0 is a java program that calculates patristic distances from large trees in a range of file formats and allows graphical and statistical interpretation of distance matrices calculated by other programs.

Phased data are ordered along one chromosome and so from these data you know the haplotype. Unphased data are simply the genotypes without regard to which one of the pair of chromosomes holds that allele.

N50 describes a sequence length whereas L50 describes a number of sequences. What am really confused ...

#Phylogenetics #analysis https://bip.weizmann.ac.il/education/course/introbioinfo/03/lect12/phylogenetics.pdf

Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role in the emerging new branch of biology known as functional genomics. The book provides the reader with an understanding of the...

Molecular Phylogenetics and Evolution https://www.journals.elsevier.com/molecular-phylogenetics-and-evolution accept bioinformatics pipeline. Impact 4.4 

EMBO fellowship http://www.embo.org/funding-awards/fellowships/long-term-fellowships#about