BOL

DISCO is a multi threaded and multiprocess distributed memory overlap-layout-consensus (OLC) metagenome assembler. Disco was developed as a scalable assembler to assemble large metagenomes from billions of Illumina sequencing reads of complex...

https://ocw.mit.edu/courses/biology/7-91j-foundations-of-computational-and-systems-biology-spring-2014/lecture-slides/MIT7_91JS14_Lecture6.pdf

#Assembly #Algorithms for #Next-Generation Sequencing Data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2874646/

#Filter out #reads with #size to discard reads containing many Ns. BBNorm ( https://sourceforge.net/projects/bbmap/ )

#Sickle ( https://github.com/najoshi/sickle ) to #trim #reads using a 20-Phred quality threshold

Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of reads was simplified by removing transitive edges and trimming short branches. Unitigs were generated based on minimum cost flow analysis of the overlap graph...

robelix/sub2srt - subtitle converter reyjrar/graphite-scripts - A Collections of Scripts for Working with Graphite regilero/check_nginx_status - Nagios check for nginx status report omniti-labs/resmon -...

tjstein/php5-fpm-munin-plugins - A set of Munin plugins for PHP5-FPM perusio/nginx-munin - A set of plugins for monitoring nginx with Munin openresty/lua-resty-memcached - Lua memcached client driver for the ngx_lua based on the...

fujiwara/perl-queue-q4pg-lite - simple message queue using PostgreSQL. formbuilder/formbuilder - Perl CGI::FormBuilder module for generating, validating, and processing HTML forms fastly/fastly-perl - Fastly perl...

licheng/gccfilter - gccfilter is a perl filter to colorize and simplify (or expand) gcc diagnostic messages. gccfilter is particularly aimed at g++ (i.e. dealinging with C++) messages which can contain lot of template-related errors or warnings...

A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a script written in Perl that will assist you with your MySQL configuration and make recommendations for increased performance and...

Remove the unnecessary #fasta #header. $ sed 's/\s.*$//' Adineta_vaga_v2.0.scaffolds.fa > new_file.fasta

Explore the math with demos https://www.desmos.com/ #math #demo #equation #graph #plot

GeneProf is a web-based, graphical software suite that allows users to analyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis for next-gen data! Some of...

Split the file in Linux with size. $ split --bytes=50M aaaa.fa #split #linux #size

This is the documentation of the circlize package. Examples in the book are generated under version 0.4.1. If you use circlize in your publications, I would be appreciated if you can cite: Gu, Z. (2014) circlize implements and...

Know your age by blood sample http://www.aging.ai/ #Blood #AI #Age #Sample

The #rainfall #plot: its #motivation, #characteristics and #pitfalls https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1679-8

BioStat handbook for Biologist http://www.biostathandbook.com/