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Learn BioStat http://www.biostathandbook.com/ #Bio #Stat #Learn

A simple, extensible, Perl script for producing figures of large phylogenetic trees. While there are many other tree drawing programs, slacTree was originally written in 2009 to fill a need for producing publication quality figures of circular...

I-PV is a interactive data visualization software designed for inspection of protein sequences and mutation information. It is mainly used for Genetics and Bioinformatics. So what exactly makes it standout? http://i-pv.org/ipv_rec

Young Professional http://www.spices.res.in/pdf/interview-03.07.2017.pdf #WalkIn #IISER

Perl regular expression syntax. https://www.cs.tut.fi/~jkorpela/perl/regexp.html #Perl #Regexp #Learn #Help

DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and...

Beginner’s #guide to #comparative #bacterial genome #analysis using #next-generation sequence data https://microbialinformaticsj.biomedcentral.com/articles/10.1186/2042-5783-3-2

Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz #Reads #NGS #Extract #Pattern

You can use the df command to know the free space in the disk: $ df -h . #df #Linux #List #Free #Space

To know the size of the directory in current folder. $ du -sh * #Size #Directory #List #Space #Linux #du

Here are the following steps I suggest: 1) map the reads on the contigs in order to determine the average coverage (and see whether 25% of the reads is an amount too low or actually OK in view of assembler/MIRA requirements.2) plot the histogram of...

DESCHRAMBLER is shown to produce highly accurate reconstructions using data simulation and by benchmarking it against other reconstruction tools You can find the detail of reconstructed data at http://bioinfo.konkuk.ac.kr/DESCHRAMBLER/

CoreTracker detects evidences of codon reassignment from the protein repertoire of a set of genomes by successively applying different algorithms. It’s a filtering approach that explore all possible reassignments in every genomes from the...