BOL: All Site Activity

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- BioHack@biohack
BioHack answered the question What is Phasing? 3233 days ago

Phased data are ordered along one chromosome and so from these data you know the haplotype. Unphased data are simply the genotypes without regard to which one of the pair of chromosomes holds that allele.
- BioHack@biohack
BioHack asked What is L50 in genome assembly? 3233 days ago

N50 describes a sequence length whereas L50 describes a number of sequences. What am really confused ...
- BioHack@biohack
BioHack is now a friend with Jit 3233 days ago
BioHack@biohack
Jit@jit.aber
- Jit@jit.aber
Jit is now a friend with BioHack 3233 days ago
Jit@jit.aber
BioHack@biohack
- Jit@jit.aber
Jit posted to the wire 3234 days ago

#Phylogenetics #analysis https://bip.weizmann.ac.il/education/course/introbioinfo/03/lect12/phylogenetics.pdf
- Jit@jit.aber
Jit bookmarked Sequence - Evolution - Function; Computational Approaches in Comparative Genomics 3234 days ago

Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role in the emerging new branch of biology known as functional genomics. The book provides the reader with an understanding of the...

https://www.ncbi.nlm.nih.gov/books/NBK20260/
- Neel@neelam
Neel commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 3235 days ago

Molecular Phylogenetics and Evolution https://www.journals.elsevier.com/molecular-phylogenetics-and-evolution accept bioinformatics pipeline. Impact 4.4
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary created a new bio-script Loop over with perl 3236 days ago
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary posted a new ad in the Opportunity Bioinformatics opening at JNU 3236 days ago
- Rahul Nayak@rahul
Rahul Nayak commented on the blog Various scholarships around the world !! 3236 days ago

EMBO fellowship http://www.embo.org/funding-awards/fellowships/long-term-fellowships#about
- Poonam Mahapatra@poonam
Poonam Mahapatra created a new bio-script Count the number of N in fasta file with Perl 3236 days ago
- Neel@neelam
Neel asked What is Phasing? 3238 days ago
- Neel@neelam
Neel bookmarked LIBSVM -- A Library for Support Vector Machines 3238 days ago

LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). It supports multi-class classification. Since version 2.8, it...

https://www.csie.ntu.edu.tw/~cjlin/libsvm/
- Neel@neelam
Neel posted to the wire 3239 days ago

Reformat you fasta sequence with size. $ seqkit seq -w 50 allGenomeContacted.fa > allGenomeContacted_final.fa #Reformat #Fasta #Size
- Neel@neelam
Neel created a new bio-script Extract the fastq sequence with range in Perl 3239 days ago
- Rahul Nayak@rahul
Rahul Nayak created a new bio-script Create a heatmap with R 3240 days ago
- Rahul Nayak@rahul
Rahul Nayak bookmarked R tuorial 3240 days ago

R learning resources https://flowingdata.com/

https://flowingdata.com/
- Jit@jit.aber
Jit bookmarked Quota synteny alignment 3241 days ago

Typically in comparative genomics, we can identify anchors, chain them into syntenic blocks and interpret these blocks as derived from a common descent. However, when comparing two genomes undergone ancient genome duplications (plant genomes in...

https://github.com/tanghaibao/quota-alignment
- Jit@jit.aber
Jit posted to the wire 3241 days ago

Remove unwanted character from fasta file. $ sed -e '/^[^>]/s/[^ATGCatgc]/N/g' file.fa #IUPAC #Special #Character #Remove
- Jit@jit.aber
Jit posted to the wire 3243 days ago

Print each command before executing? Bash script to print each command before executing. $ bash -x myscript.sh #Print #Command #Bash

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