BOL: All Site Activity

All Site Activity

- BioStar@biostar
BioStar published a blog post Bioinformatics tools for telomere to telomere assembly ! 1354 days ago

optimize HiFi reads
- BioStar@biostar
BioStar posted to the wire 1356 days ago

Enrichment analysis learning https://www.youtube.com/watch?v=2NC1QOXmc5o #Enrichment #Analysis #Learn
- Shruti Paniwala@shruti
Shruti Paniwala posted a new ad in the Opportunity Senior Scientist bioinformatics @ Eurofins Genomics India Pvt Ltd, Bengaluru. 1357 days ago
- Neel@neelam
Neel bookmarked QuasR: Quantification and annotation of short reads in R 1359 days ago

The QuasR package (short for Quantify and annotate short reads in R) integrates the functionality of several R packages (such as IRanges (Lawrence et al. 2013) and Rsamtools) and external software (e.g. bowtie, through the Rbowtie package, and...

https://www.bioconductor.org/packages/devel/bioc/vignettes/QuasR/inst/doc/QuasR.html
- Neel@neelam
Neel created a new bio-script Perl onliner to print fasta headers ! 1359 days ago
- Neel@neelam
Neel created a new bio-script Commandline to Extract a list of specific read IDs from a bam file 1359 days ago
- Jit@jit.aber
Jit created a new bio-script Bam to Fastq convert ! 1359 days ago
- Jit@jit.aber
Jit answered the question How to resolve samtools index error "Chromosome blocks not continuous" ? 1359 days ago

It generally occur when you sort with -n flag (-samtools sort n /Sort by read name). Try sorting without -n flag and then index it.
- LEGE@lege
LEGE asked How to resolve samtools index error "Chromosome blocks not continuous" ? 1360 days ago

samtools index mappedPairs.sorted.bam return the following error ... [bam_sort_core] merging from 0 files and 2 in-memory blocks...[E::hts_idx_push] Chromosome blocks not continuoussamtools index: failed to create index for "mappedPairs.sorted.bam"
- Jit@jit.aber
Jit bookmarked Interactive Bioinformatics Resources ! 1360 days ago

Learn how to use bioinformatics tools right from your browser.Everything runs in a sandbox, so you can experiment all you want. More at sandbox.bio

http://sandbox.bio
- BioStar@biostar
BioStar posted to the wire 1362 days ago

Ten simple #rules for #teaching applied programming in an authentic and immersive #online environment https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009184
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary posted to the wire 1363 days ago

Python for Biologist https://pythonforbiologists.com/ #Book #Learn #Python
- Jitendra Narayan@admin
Jitendra Narayan is now a friend with Ajay Patil 1366 days ago
Jitendra Narayan@admin
Ajay Patil@secret1
- Ajay Patil@secret1
Ajay Patil is now a friend with Jitendra Narayan 1366 days ago
Ajay Patil@secret1
Jitendra Narayan@admin
- Jit@jit.aber
Jit commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 1366 days ago

APC free journals https://www.who.int/publications/journals/bulletin
- Jitendra Narayan@admin
Jitendra Narayan posted a new ad in the Opportunity Project Associate-I | Project Associate-II | Senior Project Associate @ IGIB 1366 days ago
- Shruti Paniwala@shruti
Shruti Paniwala commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 1403 days ago

Bioinformatics jobs at https://jobrxiv.org/?search_keywords=bioinformatics
- LEGE@lege
LEGE bookmarked Ventoy: an open source tool to create bootable USB drive 1403 days ago

Ventoy is an open source tool to create bootable USB drive for ISO/WIM/IMG/VHD(x)/EFI files. With ventoy, you don't need to format the disk over and over, you just need to copy the image files to the USB drive and boot it. You can copy many image...

https://github.com/ventoy/Ventoy
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary commented on a bookmark Coronavirus Resources ! 1406 days ago

Some important resources here https://artic.network/ncov-2019
- Neel@neelam
Neel commented on a bookmark Calling variants in non-diploid systems 1406 days ago

FreeBayes is widely used for calling variants in diploid systems. However, it can also be used for calling variants in pooled samples where the number of samples is not known. This is the exact scenario we have here: in our sample we have multiple...

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