BOL

This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model). Its goal is to build a graph that is locally directed and acyclic while preserving large-scale variation. Maintaining...

The pandemic has worsened the plight of postdoctoral researchers. Funders need to be offering more than moral support.

Using KAT again (You will need the modules: KAT/2.1.1 and gnuplot/4.6.5) – we can plot the kmer content of the assembly compared to the kmer content of the read set. The first thing we need to do is to combine the reads into a...

Reapr is a tool trying to find explicit errors in the assembly based on incongruently mapped reads. It is heavily based on too low span coverage, or reads mapping too far or too close to each other. The program will also break up...

Huge amounts of genotype data are being produced with recent technological advances, both from increasingly comprehensive and inexpensive genome-wide SNP microarrays and from ever more accessible whole-genome and whole-exome sequencing methods

Biology Direct journals accept short notes/ application notes https://biologydirect.biomedcentral.com/submission-guidelines/aims-and-scope

NAR Web server accept tools https://academic.oup.com/nar/issue/43/W1

Ten simple #rules to increase #computational #skills among #biologists with Code Clubs https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008126

GENOMICS AND COMPUTATIONAL BIOLOGY  https://genomicscomputbiol.org/ojs3/GCB/index

List of bioinformatics tools/Software Website References for genome assembly: