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Important Journals, Blogs and Forums for Bioinformaticians
By Jit 2845 days ago Comments (41)
Journals. Most journals have RSS feeds for their current updates.
- Bioinformatics - RSS feed of current and advance online publications
- Genome Research - current & advance
- Genome Biology - editors picks, latest, most viewed, most forwarded. (Hit the RSS icon under each tab).
- PLoS Genetics - new articles
- PLoS Computational Biology - new articles
- Nature Genetics - current TOC and AOP
- Nature Reviews Genetics - current TOC and AOP
- Bioinformatics
- BMC Bioinformatics
- Briefings in Bioinformatics
- Genome Biology
- Genome Research: current and AOP
- Microbiome
- Nature Genetics, current & AOP
- Nature Reviews Genetics, current & AOP
- Nucleic Acids Research
- PLOS Computational Biology
- PLOS Genetics
Blogs. Some of these blogs are very relevant to bioinfo jobs. Others are more personal interest.
- The OpenHelix Blog
- Ensembl blog
- Galaxy News
- Blue Collar Bioinformatics
- Homologus
- Golden Helix - our 2 SNPs
- Genomics Law Report
- R-bloggers (aggregates feeds from >350 blogs about R)
- Genomes Unzipped
- Jason Moore's Epistasis Blog
- 23andMe - the Spitoon
- Variance Explained: David Robinson’s blog (Data Scientist at Stack Overflow, works in R and Python).
- Global Biodefense: News on pathogens, outbreaks, and preparedness, with periodic posts on genomics and bioinformatics-related developments and funding opportunities.
- In between lines of code: Lex Nederbragt’s blog on biology, sequencing, bioinformatics, …
- Simply Statistics: A statistics blog by Rafa Irizarry, Roger Peng, and Jeff Leek.
- Bits of DNA: Reviews and commentary on computational biology by Lior Pachter (fair warning: dialogue here can get a bit heated!).
- Blue Collar Bioinformatics: articles related tool validation and the open source bioinformatics community.
- Microbiome Digest – Bik’s Picks: A daily digest of scientific microbiome papers, by Elisabeth Bik, Science Editor at uBiome.
- Living in an Ivory Basement: Titus Brown’s blog on metagenomics, open science, testing, reproducibility, and programming.
- Enseqlopedia: James Hadfield’s blog on all things NGS.
- Epistasis Blog: Jason Moore’s computational biology blog.
- RStudio Blog: announcements about new RStudio functionality, updates about the tidyverse, and more.
- nextgenseek.com: Next-Gen Sequencing Blog covering new developments in NGS data & analysis.
- RNA-Seq Blog: Transcriptome Research & Industry News.
- The Allium: We all need a little humor in our lives. Like The Onion, but for science.
Forums.
Comments
Bioinformcs software are published by Genome Biology - Software section
https://genomebiology.biomedcentral.com/submission-guidelines/preparing-your-manuscript/software
Current Protocols in Bioinformatics is a comprehensive source for protocols and reviews in the multidisciplinary field of bioinformatics, including the areas of analyzing expression patterns, pathway analysis, recognizing functional domains, building and using biological databases, and more.
https://currentprotocols.onlinelibrary.wiley.com/journal/1934340x
Bioinformatics tools and packages is also accepted in G3 journal https://www.g3journal.org/content/software-and-data-resources-0
Molecular informatics journal is also a good alternative for bioinformatics tools publication https://onlinelibrary.wiley.com/toc/18681751/2020/39/4
NAR Genomics and Bioinformatics https://academic.oup.com/nargab accept tools and software
Bioinformatics tools are published by this journal f1000research https://f1000research.com/for-authors/article-guidelines/software-tool-articles
Journal of Theoretical Biology also accept computational papers
https://www.journals.elsevier.com/journal-of-theoretical-biology
International Journal of Bioinformatics Research and Applications
Indexed in
Methods in Molecular Biology
https://www.springer.com/series/7651
Accept bioinformatics tools, such as ART etc
NAR Web server accept tools
https://academic.oup.com/nar/issue/43/W1
Biology Direct journals accept short notes/ application notes
https://biologydirect.biomedcentral.com/submission-guidelines/aims-and-scope
IEEE Transactions on Knowledge and Data Engineering accepts bioinformatics and algorithms manuscripts https://www.computer.org/csdl/journal/tk
Journal of Integrative Bioinformatics
https://www.degruyter.com/view/journals/jib/jib-overview.xml?tab_body=overview
Bioinformatics Journals Ranks from Google Scholar
1: Bioinformatics Journals (the most recent Impact Factor :: 5-year Impact Factor)
2: Other journals that publish bioinformatics papers
3: Low-cost or no-cost journals
APC free journals
https://www.who.int/publications/journals/bulletin
Molecular informatics https://onlinelibrary.wiley.com/journal/18681751