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Abhi on LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data (173 days ago): Detail paper here https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8111061/- BioStar on Perl Module Installation (629 days ago): To install BioPerl on a macOS system, you can follow these steps: Open the...
- Abhi on CovCal: Coverage / Read Count Calculator (790 days ago): Sequencing coverage is defined as the average number of reads that covers...
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Awesome bioinformatics pipelines !
By Jitendra Prajapati 3164 days agogithub.com - A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipelineRNA-Seq De novo Assembly Using Trinity
By Surabhi Chaudhary 3172 days agogithub.com - Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules:...GA4GH Data Working Group
By Jitendra Prajapati 3174 days agohttp://ga4gh.org/#/ - GA4GH Data Working Group Led by David Haussler (UCSC) and Richard Durbin (Sanger Institute), the Data Working Group (DWG) of the Global Alliance brings together the leading Genome Institutes and Centers with IT industry leaders to create global...LAST
By Archana Malhotra 3186 days agohttp://last.cbrc.jp/ - LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with...Pattern Searching in a Single Genome
By Aasha 3188 days agowww.stats.ox.ac.uk - Pattern searching holds much importance for biologists , for the understanding of DNA ( and its functionality) can be more than a matter of satisfying curiosity , but also give answers to many issuess uchas medical conditions . However,there are a...Microscope
By Jitendra Narayan 3191 days agomicroscope.readthedocs.org - Microscope Platform user documentation. The MicroScope platform is available at this URL: https://www.genoscope.cns.fr/agc/microscopeBreakSeq2
By Jitendra Narayan 3195 days agobioinform.github.io - Ultrafast and accurate nucleotide-resolution analysis of structural variants More at http://bioinform.github.io/breakseq2/ Download BreakSeq2 Latest version: https://github.com/bioinform/breakseq2/archive/2.2.tar.gzFor other versions, see...scikit-learn
By Jitendra Prajapati 3195 days agoscikit-learn.org - Machine Learning in Python Simple and efficient tools for data mining and data analysis Accessible to everybody, and reusable in various contexts Built on NumPy, SciPy, and matplotlib Open source, commercially usable - BSD license More...destruct
By Jitendra Prajapati 3195 days agobitbucket.org - Destruct is a tool for joint prediction of rearrangement breakpoints from single or multiple tumour samples. More at https://bitbucket.org/dranew/destruct
