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The Wire
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Rahul Agarwal
@raag
Thread
By
Rahul Agarwal
2397 days ago
Complete and excellent tutorial for Single Cell Sequencing-
https:/
/
hemberg-lab.github.io/
scRNA.seq.course/
index.html
Rahul Agarwal
@raag
Thread
By
Rahul Agarwal
2397 days ago
List of excellent scRNA-seq analysis tools-
https:/
/
github.com/
seandavi/
awesome-single-cell
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2397 days ago
Marginal plot in R
https:/
/
stackoverflow.com/
questions/
8545035/
scatterplot-with-marginal-histograms-in-ggplot2
#R
#Plot
#Marginal
Jit
@jit.aber
Thread
By
Jit
2400 days ago
Why are de Bruijn
#graphs
useful for
#genome
#assembly
?
https:/
/
www.ncbi.nlm.nih.gov/
pmc/
articles/
PMC5531759/
Neel
@neelam
Thread
By
Neel
2401 days ago
Store all files in a array using perl: my
@filesbwa
= <$base_name/reads/$base_name.$library.bwa.*fa>
#Store
#Keep
#Array
#Perl
Jit
@jit.aber
Thread
By
Jit
2401 days ago
#Error
filtering, pair assembly and error
#correction
for next-generation sequencing
#reads
https:/
/
academic.oup.com/
bioinformatics/
article/
31/
21/
3476/
194979
Surabhi Chaudhary
@surabhi
Thread
By
Surabhi Chaudhary
2404 days ago
Remove the unwanted characters from Fasta file: sed -e '/^[^>]/s/[^ATGCatgc]/N/g' infile.fa
#sed
#unwanted
#illegal
#remove
#correct
#fasta
#linux
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
2404 days ago
Remove the fasta with zero size: awk 'BEGIN {RS = ">" ; FS = "\n" ; ORS = ""} $2 {print ">"$0}' input.fas > output.fas
#fasta
#remove
Neel
@neelam
Thread
By
Neel
2405 days ago
Bioinformatics JRF at IIT
https:/
/
www.iitr.ac.in/
administration/
uploads/
File/
bt/
2017/
adv30112017.pdf
#JRF
Jit
@jit.aber
Thread
By
Jit
2408 days ago
Linux command to find the file contains a string "LOCK_EX": grep -Ril "LOCK_EX" /
#Root
#Find
#Linux
#Grep
#search
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2412 days ago
Random forest algorithms
http:/
/
blog.yhat.com/
posts/
random-forests-in-python.html
#forest
#random
#algo
Archana Malhotra
@archana
Thread
By
Archana Malhotra
2413 days ago
Understanding MinION data
https:/
/
porecamp.github.io/
2016/
tutorials/
PoreCamp2016-02-MinIONData.pdf
#data
#understand
#learn
Jit
@jit.aber
Thread
By
Jit
2414 days ago
Fastq 2 fasta. $ sed -n '1~4s/^@/>/p;2~4p' test.fastq > test.fasta
#fastq
#fasta
#convert
Neel
@neelam
Thread
By
Neel
2423 days ago
3D-Jury: a simple approach to improve protein structure predictions
#Protein
#Predict
#Structure
https:/
/
academic.oup.com/
bioinformatics/
article/
19/
8/
1015/
235399
Jit
@jit.aber
Thread
By
Jit
2424 days ago
Example commands to remove lower-case masking: perl -pe '/^[^>]/ and $_=uc' genomic.fna > genomic.unmasked.fna
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