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The Wire
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Neelam Jha
@neelam
Thread
By
Neelam Jha
1634 days ago
Multifasta 2 singlefasta cat toy.fasta| awk '{ if (substr($0, 1, 1)==">" {filename=(substr($0,2) ".fa")} print $0 > filename }'
#Split
#fasta
#multifasta
LEGE
@lege
Thread
By
LEGE
1635 days ago
One can evaluate the accuracy of a mapper or a SNP caller with wgsim_eval.pl that comes with the package.
#Evaluate
#Mapping
#SNP
LEGE
@lege
Thread
By
LEGE
1635 days ago
Deep_learning course
https:/
/
www.slideshare.net/
TessFerrandez/
notes-from-coursera-deep-learning-courses-by-andrew-ng
#AI
#DeepLearn
LEGE
@lege
Thread
By
LEGE
1635 days ago
Multiline to singleline covert. $ awk '/^>/ {printf("%s%s\t",(N>0?"\n":""),$0);N++;next;} {printf("%s",$0);} END {printf("\n");}' < input.fa
#Multi
#Single
#Convert
#awk
LEGE
@lege
Thread
By
LEGE
1635 days ago
#Estimate
the
#insert
#size
with mapped reads $ head -10000 mappings.sam | awk '{ if ($9 > 0) { N+=1; S+=$9; S2+=$9*$9 }} END { M=S/N; print "n="N", mean="M", stdev="sqrt ((S2-M*M*N)/(N-1))}'
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
1635 days ago
Graph reference genome
https:/
/
vimeo.com/
184983995
#Graph
#Reference
#Genome
#GraphRef
Jit
@jit.aber
Thread
By
Jit
1638 days ago
This works and I dont know how :) perl -pe '}{$_=$.' filename
#Perl
#Magic
#PerlMagic
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
1644 days ago
https:/
/
www.frontiersin.org/
articles/
10.3389/
fmicb.2018.00973/
full
#Recent
#HGT
Neelam Jha
@neelam
Thread
By
Neelam Jha
1644 days ago
Kill the screen $ screen -X -S [session # you want to kill] quit
#Screen
#Quit
#Linux
#Session
#Remote
Neelam Jha
@neelam
Thread
By
Neelam Jha
1644 days ago
#Rename
the
#fasta
#header
and
#keep
first $ perl -ne 'if (/^(>\S+)/){print "$1\n";}else{print $_;}' realTestDATA.fa > realTestDATA_headerCorrected.fa
#Perl
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
1650 days ago
R versus Python language
https:/
/
data-flair.training/
blogs/
r-vs-python/
#R
#Python
Jit
@jit.aber
Thread
By
Jit
1667 days ago
DSP analysis of DNA sequences
http:/
/
www.bioprotection.org/
articles/
DNA-37.pdf
#DSP
#DNA
#Analysis
#Sequences
#Scoring
Jit
@jit.aber
Thread
By
Jit
1670 days ago
https:/
/
github.com/
stephenturner/
oneliners
#Bash
#Tutorial
#OneLiner
Neelam Jha
@neelam
Thread
By
Neelam Jha
1674 days ago
List all files by size in Linux $ ls -l -S | sort -k 5 -n
#Linux
#Size
#List
Jit
@jit.aber
Thread
By
Jit
1676 days ago
https:/
/
serbonline.in/
SERB/
Supra
New Govt SERB SUPRA Research Grant – Applications Invited, Deadline Nov 29 2019 05:00 PM
#SERB
#Fund
#Scholarship
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