Jit
Enthusiast computational biologist with business dream !!!
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Tools and Method for Haplotype phasing !
By Manisha Mishra 2012 days agoHuge amounts of genotype data are being produced with recent technological advances, both from increasingly comprehensive and inexpensive genome-wide SNP microarrays and from ever more accessible whole-genome and whole-exome sequencing methodssunbeam: A robust, extensible metagenomics pipeline
By Jit 2091 days agogithub.com - Sunbeam is a pipeline written in snakemake that simplifies and automates many of the steps in metagenomic sequencing analysis. It uses conda to manage dependencies, so it doesn't have pre-existing dependencies or admin...
Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?
Rahul Agarwal 4619 days agoTwo major breakthrough!!
By Rahul Agarwal 4572 days agoHigh-value Tannat grape sequenced and $1 syphilis detection testEncode sequencing data freely available to download and use for academic means
By Rahul Agarwal 4379 days ago Comments (3)genome.ucsc.edu - In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription factors, followed...Tsetse Fly Genome sequenced
By Rahul Agarwal 4337 days agohttp://www.sciencemag.org/content/344/6182/380Science for Life Laboratory (SciLifeLab)-Sweden
Science for Life Laboratory (SciLifeLab) is a national center for molecular biosciences with focus on health and environmental research. The center combines frontline technical expertise with advanced knowledge of translational medicine and...
miRNA database and tools
Last updated 4170 days ago by Rahul AgarwalSince few years miRNA has shown to play important role in therapeutic related research and also known to play vital role in controlling gene expression specifically at transcriptional and post-transcription levels. Here are some important DBs and...GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
By Rahul Agarwal 3900 days ago Comments (1)github.com - GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very high sensitivity and accuracy, and also presents a significant...
